{"id":"W2572831998","doi":"10.1021/acs.jproteome.6b00720","title":"Pathogenicity Genes in <i>Ustilaginoidea virens</i> Revealed by a Predicted Protein–Protein Interaction Network","year":2017,"lang":"en","type":"article","venue":"Journal of Proteome Research","topic":"Plant Disease Resistance and Genetics","field":"Agricultural and Biological Sciences","cited_by":34,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"State Administration of Foreign Experts Affairs; Ministry of Science and Technology of the People's Republic of China; Ministry of Education of the People's Republic of China; National Natural Science Foundation of China","keywords":"Biology; Pathogenicity; Gene; Genetics; Protein–protein interaction; Protein Interaction Networks; Computational biology; Microbiology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001164592,0.000267705,0.0002118856,0.001123732,0.0003065314,0.0004127912,0.0001568432,0.0001852197,0.0007112392],"category_scores_gemma":[0.0002356504,0.0001432209,0.0005265519,0.0008961897,0.0001359469,0.0002687187,0.0002923091,0.0001720083,0.0001649676],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003643663,"about_ca_system_score_gemma":0.0003429116,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002212402,"about_ca_topic_score_gemma":0.002760812,"domain_scores_codex":[0.9999181,0.00001322348,0.000006491371,0.00003030836,0.00001772317,0.00001410193],"domain_scores_gemma":[0.9999037,0.00002399086,0.00003911845,0.000005534991,0.00001140852,0.00001622272],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.0008608358,0.0001804055,0.08191821,0.0009291766,0.0003730326,0.002018899,0.0004379294,0.02342219,0.8358206,0.00316226,0.002137054,0.0487394],"study_design_scores_gemma":[0.00005991391,0.0004208748,0.6183136,0.0001245647,0.0007164084,0.002699012,0.0005419673,0.2824603,0.0680681,0.007131783,0.01935439,0.0001091896],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9842768,0.0007971816,0.009970012,0.0001049159,0.000008864523,0.00003390518,0.003226245,0.0003499224,0.001232162],"genre_scores_gemma":[0.9747112,0.0005994769,0.01369592,0.00002690007,0.00000537766,0.0000410626,0.01017393,0.00002729204,0.0007188696],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002212402,"threshold_uncertainty_score":0.004399061,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05545331961748377,"score_gpt":0.3261328195870954,"score_spread":0.2706794999696117,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}