{"id":"W2578072036","doi":"10.1101/100750","title":"ARCS: Assembly Roundup by Chromium Scaffolding","year":2017,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":true,"ca_institutions":"BC Cancer Agency","funders":"National Human Genome Research Institute; National Institutes of Health; Genome British Columbia; Genome Canada","keywords":"Genome; Sequence assembly; Computational biology; Nanopore sequencing; Computer science; Genomics; Shotgun sequencing; Software; Biology; Genetics; Gene; Programming language","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003682163,0.00253623,0.001509235,0.00251596,0.001670495,0.003088768,0.003553927,0.001227538,0.03669693],"category_scores_gemma":[0.008303644,0.002217124,0.002671093,0.002130385,0.001006585,0.001490697,0.003961798,0.004096848,0.02706206],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008092776,"about_ca_system_score_gemma":0.001467695,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002261979,"about_ca_topic_score_gemma":0.002998226,"domain_scores_codex":[0.9971536,0.0004720497,0.0002568426,0.0009999904,0.000886242,0.0002311193],"domain_scores_gemma":[0.9951239,0.00188326,0.0004413913,0.001599358,0.0006567362,0.0002952847],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.003815105,0.0003417896,0.004494488,0.003243021,0.00106064,0.001589948,0.001625284,0.03390078,0.2260472,0.02834504,0.3088575,0.3866792],"study_design_scores_gemma":[0.000418657,0.0004008543,0.002602839,0.0003421818,0.0002751478,0.0008996364,0.0002448153,0.2022704,0.4219013,0.0159967,0.3541571,0.0004902378],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.01173852,0.00024152,0.6645574,0.0002447657,0.000418297,0.0003726511,0.007450976,0.3094925,0.005483408],"genre_scores_gemma":[0.05623192,0.0002962698,0.8520067,0.0002101369,0.00009958287,0.0007643345,0.02175082,0.06126468,0.007375545],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.03669693,"threshold_uncertainty_score":0.1227635,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01355522770261078,"score_gpt":0.2297788610031828,"score_spread":0.216223633300572,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}