{"id":"W2579064605","doi":"10.7150/ijbs.17390","title":"Metadata Analysis of <i>Phanerochaete chrysosporium </i>Gene Expression Data Identified Common CAZymes Encoding Gene Expression Profiles Involved in Cellulose and Hemicellulose Degradation","year":2017,"lang":"en","type":"article","venue":"International Journal of Biological Sciences","topic":"Biofuel production and bioconversion","field":"Engineering","cited_by":24,"is_retracted":false,"has_abstract":true,"ca_institutions":"Lakehead University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Phanerochaete; Hemicellulose; Chrysosporium; Glycoside hydrolase; Cellulose; Biology; Transcriptome; Biochemistry; Lignin; Gene; Gene expression; Botany","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001117706,0.0001135066,0.0002713741,0.0003421336,0.0001054873,0.0001690815,0.001321572,0.00008893498,0.00004092176],"category_scores_gemma":[0.0001899168,0.00007384697,0.00006028268,0.0001755874,0.0002635898,0.001365063,0.0004247001,0.000134553,5.816995e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003129046,"about_ca_system_score_gemma":0.00001791578,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006057189,"about_ca_topic_score_gemma":0.00002470579,"domain_scores_codex":[0.9986366,0.00006605169,0.0004970467,0.0002624764,0.0004153977,0.0001224317],"domain_scores_gemma":[0.9989941,0.00007563223,0.0004875991,0.0002583608,0.0001219721,0.00006231669],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004488819,0.00003885949,0.05579165,0.000009734179,0.00006650484,0.00001028461,0.00006154623,0.0001676156,0.9423102,0.00001316513,0.00007803278,0.001407556],"study_design_scores_gemma":[0.0002634419,0.00004238964,0.02239944,0.00007599004,0.00004698991,0.000008192738,0.000134495,0.006789203,0.9698164,0.0001222308,0.0002019382,0.00009926846],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9965073,0.001075337,0.001325325,0.0002625135,0.0006538061,0.00006244408,0.00005520878,0.00001086573,0.00004716114],"genre_scores_gemma":[0.9947978,0.001464389,0.003488296,0.00001715761,0.0001160757,9.649383e-7,0.00009333422,0.000002794533,0.00001914769],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03339221,"threshold_uncertainty_score":0.3011392,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08765872426866572,"score_gpt":0.311046920597696,"score_spread":0.2233881963290302,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}