{"id":"W2580963738","doi":"10.1261/rna.060368.116","title":"RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme","year":2017,"lang":"en","type":"article","venue":"RNA","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":205,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal; Institute for Research in Immunology and Cancer","funders":"FP7 Research Potential of Convergence Regions; National Institutes of Health; National Natural Science Foundation of China; National Institute of General Medical Sciences; National Research Centre; Narodowe Centrum Nauki; Fundacja na rzecz Nauki Polskiej; European Commission; Krajowy Naukowy Osrodek Wiodacy; Ministerstwo Edukacji i Nauki; Division of Chemical, Bioengineering, Environmental, and Transport Systems; Agence Nationale de la Recherche; Wellcome Trust; Burroughs Wellcome Fund; Thousand Young Talents Program of China; Howard Hughes Medical Institute; Zhejiang University; National Science Foundation","keywords":"Ribozyme; Riboswitch; RNA; Computational biology; Nucleic acid structure; Biology; Aptamer; Pseudoknot; Ligase ribozyme; Non-coding RNA; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001544872,0.001031254,0.001108865,0.0004600655,0.0007117083,0.001145073,0.001188037,0.001240356,0.004686873],"category_scores_gemma":[0.001957729,0.0005914639,0.00139754,0.0003235611,0.0006603203,0.0007914513,0.001296213,0.001387154,0.001398921],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006136111,"about_ca_system_score_gemma":0.001139768,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002658254,"about_ca_topic_score_gemma":0.0024347,"domain_scores_codex":[0.9991309,0.0001837167,0.00004027432,0.0002417409,0.000288569,0.0001147777],"domain_scores_gemma":[0.9988747,0.000389646,0.00007743522,0.0002636185,0.0001971768,0.0001974438],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.003857764,0.0009753275,0.0235549,0.000748719,0.001081164,0.001986004,0.0008920153,0.4115111,0.2256485,0.01714318,0.04935521,0.2632461],"study_design_scores_gemma":[0.0002810413,0.000721095,0.003954023,0.00002440075,0.00009359948,0.0002700454,0.0001779534,0.8351909,0.1406271,0.005184502,0.01334702,0.0001283731],"study_design_candidate":"simulation_or_modeling","study_design_consensus":"simulation_or_modeling","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.6205876,0.0005141496,0.3484026,0.0007464128,0.0005178946,0.0006325894,0.005143526,0.01772201,0.005733188],"genre_scores_gemma":[0.5665244,0.000136341,0.413656,0.0002676198,0.00005173367,0.0004464751,0.01044104,0.001176056,0.007300305],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004686873,"threshold_uncertainty_score":0.01567912,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01471133854570787,"score_gpt":0.2352579719384696,"score_spread":0.2205466333927617,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}