{"id":"W2581305830","doi":"10.1128/aem.03374-16","title":"Development of <i>oriC</i> -Based Plasmids for Mesoplasma florum","year":2017,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Phytoplasmas and Hemiptera pathogens","field":"Agricultural and Biological Sciences","cited_by":15,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Sherbrooke","funders":"Fonds de recherche du Québec – Nature et technologies; Natural Sciences and Engineering Research Council of Canada; Defense Advanced Research Projects Agency; Government of Canada","keywords":"Plasmid; Computational biology; Biology; Genetics; DNA Transposable Elements; Computer science; DNA; Gene; Genome; Transposable element","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007468889,0.0001211388,0.0001795221,0.00000527752,0.0004171352,0.00001460477,0.0001691658,0.00009783544,0.00007111219],"category_scores_gemma":[0.000002282079,0.00005472665,0.0000435347,0.000008478865,0.000173874,0.00002217817,0.0001007642,0.0000397008,0.00001010397],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001237771,"about_ca_system_score_gemma":0.000004166207,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000001305747,"about_ca_topic_score_gemma":0.00004389988,"domain_scores_codex":[0.9993577,0.000004841363,0.0001649621,0.0002376099,0.00002481677,0.0002100463],"domain_scores_gemma":[0.9997187,0.00004740008,0.0001160183,0.00006763534,0.000002259515,0.00004794423],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003879647,0.00005553684,0.005379229,0.000006838105,0.00001056816,5.381448e-7,0.00003484979,7.012453e-7,0.9711193,0.0001202318,0.0001006348,0.02313271],"study_design_scores_gemma":[0.0006135626,0.0001156518,0.04164397,0.000006906708,0.00001303641,0.00001253388,0.0001401993,0.00002028583,0.7694104,0.0001020162,0.1877055,0.0002158794],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9986358,0.00003356122,0.00001366113,0.0001229247,0.00007242865,0.0001807314,0.0002907369,0.00000888536,0.0006412751],"genre_scores_gemma":[0.9967983,0.00001499249,0.002607506,0.0001423406,0.00004547835,0.00003985902,0.0003043642,0.000001175847,0.00004595449],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.201709,"threshold_uncertainty_score":0.3208309,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01323636904786297,"score_gpt":0.1854561260669911,"score_spread":0.1722197570191281,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}