{"id":"W2582206824","doi":"10.1128/aac.01919-16","title":"A Whole-Genome Sequencing Approach To Study Cefoxitin-Resistant Salmonella enterica Serovar Heidelberg Isolates from Various Sources","year":2017,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":65,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institut National de Santé Publique du Québec; University of Manitoba; Public Health Agency of Canada","funders":"","keywords":"Cefoxitin; Pulsed-field gel electrophoresis; Biology; Microbiology; Salmonella enterica; Plasmid; Salmonella; Ceftiofur; Subtyping; Ampicillin; Serotype; Antibiotic resistance; Virology; Gene; Genetics; Antibiotics; Bacteria; Staphylococcus aureus; Genotype","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001916457,0.000291599,0.0002495771,0.001192729,0.0004245706,0.0003607676,0.000200491,0.0002762335,0.0009876733],"category_scores_gemma":[0.0003618256,0.0001358245,0.0002739629,0.001206024,0.0001323016,0.0001448809,0.000219611,0.0002144366,0.0002477943],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001099182,"about_ca_system_score_gemma":0.001397233,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.2087864,"about_ca_topic_score_gemma":0.3846457,"domain_scores_codex":[0.9998653,0.00001382041,0.000006742955,0.00004499569,0.00003538886,0.00003365855],"domain_scores_gemma":[0.9997726,0.00002264856,0.00004508777,0.00001721141,0.0001115187,0.00003096149],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002979805,0.0000977449,0.2137684,0.0002140404,0.0002143237,0.0003946397,0.0008379619,0.001012791,0.7546403,0.0001553807,0.000659661,0.02770688],"study_design_scores_gemma":[0.000009840619,0.0001534128,0.9788837,0.00001952695,0.00007363704,0.000487113,0.0006642868,0.002274166,0.0132304,0.0000338237,0.004159039,0.0000109923],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9872771,0.0003857086,0.004416538,0.00005655856,0.000006950373,0.0001134952,0.006168515,0.00004156042,0.001533682],"genre_scores_gemma":[0.9764051,0.0003172843,0.01020285,0.0001110765,0.000005339938,0.00004737833,0.01098102,0.00002078337,0.001909115],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2087864,"threshold_uncertainty_score":0.4151422,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03526935794290439,"score_gpt":0.2492335650053965,"score_spread":0.2139642070624921,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}