{"id":"W2585408523","doi":"10.1016/j.bpj.2016.11.2544","title":"Single Molecule Visualization of Topology-Mediated Interactions in Supercoiled DNA","year":2017,"lang":"en","type":"article","venue":"Biophysical Journal","topic":"Near-Field Optical Microscopy","field":"Engineering","cited_by":0,"is_retracted":false,"has_abstract":false,"ca_institutions":"McGill University","funders":"","keywords":"DNA supercoil; Magnetic tweezers; DNA; Optical tweezers; Biophysics; DNA origami; Topology (electrical circuits); Molecule; Chemistry; Chemical physics; Nanotechnology; Crystallography; Physics; Materials science; Biology; DNA replication; Optics; Biochemistry","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000421202,0.00007426689,0.0001446349,0.00006015127,0.00006543948,0.00005708225,0.0001616396,0.0000448572,0.0001051896],"category_scores_gemma":[0.0001400969,0.0000707646,0.00005319811,0.0000546115,0.00007244875,0.000194912,0.00002904163,0.0002074469,0.00003318664],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004673365,"about_ca_system_score_gemma":0.00001012045,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001387695,"about_ca_topic_score_gemma":0.00001669124,"domain_scores_codex":[0.9994807,0.00001874306,0.0002038788,0.00006763735,0.00007901153,0.0001500414],"domain_scores_gemma":[0.9996544,0.00004994142,0.00004498409,0.0001458193,0.00004034696,0.00006453633],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001021189,0.00009411006,0.000793595,0.000007997593,0.00001181056,0.00001144921,0.00007177316,0.00006458477,0.9980617,0.000444836,0.0001220722,0.0003059199],"study_design_scores_gemma":[0.0004546646,0.00007660915,0.01164883,0.00005641788,0.00000983613,0.00001853288,0.00003548505,0.009677423,0.9774454,0.0001928023,0.0002720171,0.000112026],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9952208,0.000008043507,0.002135227,0.0001429243,0.0004213188,0.00003767649,0.000003035808,0.00002479179,0.00200622],"genre_scores_gemma":[0.9994426,0.00001463574,0.0003452362,0.00002055092,0.0001420529,0.00000153985,0.00000224826,0.00001284534,0.00001825328],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02061628,"threshold_uncertainty_score":0.2885697,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01616015092448806,"score_gpt":0.2918173704495082,"score_spread":0.2756572195250201,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}