{"id":"W2585492154","doi":"10.1016/j.ajic.2016.05.015","title":"Infection control in the new age of genomic epidemiology","year":2017,"lang":"en","type":"review","venue":"American Journal of Infection Control","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":110,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of British Columbia; BC Centre for Disease Control","funders":"","keywords":"Outbreak; Medicine; Genomics; Epidemiology; Genotyping; Whole genome sequencing; Genome; Acinetobacter baumannii; Infection control; Genetics; Biology; Virology; Intensive care medicine; Pathology; Gene; Genotype","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002102082,0.0003221155,0.002258027,0.0002294058,0.00006766315,0.00002674185,0.0003998058,0.0002639997,0.00001493347],"category_scores_gemma":[0.00140686,0.0002145133,0.0009442532,0.0001124345,0.0004135637,0.00001077325,0.00002742075,0.000511629,0.000006860772],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008142029,"about_ca_system_score_gemma":0.0005598796,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005145006,"about_ca_topic_score_gemma":0.0001536085,"domain_scores_codex":[0.9962406,0.001619691,0.001487378,0.0002518392,0.0001240402,0.0002764758],"domain_scores_gemma":[0.9938433,0.0004379995,0.004925887,0.0005543787,0.0001515793,0.00008682512],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0002883762,0.00009971616,0.02288391,0.0004866818,0.0009435199,0.00002477485,0.0000239895,0.00008784235,0.0009788687,0.00004958322,0.001318002,0.9728147],"study_design_scores_gemma":[0.001218817,0.001302209,0.02553104,0.0009491855,0.0006353196,0.0005028163,0.000006263181,0.000003909975,0.000004418359,0.00004506013,0.9695932,0.0002077093],"study_design_candidate":"design_other","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.009612824,0.9518069,0.0363981,0.0001894866,0.0010273,0.0007100988,0.00002558688,0.000004434641,0.000225281],"genre_scores_gemma":[0.1312681,0.8671715,0.000110109,0.0002505399,0.001097048,0.000007888832,0.00001817436,0.00002983556,0.00004688528],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.972607,"threshold_uncertainty_score":0.8747601,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03589383129419303,"score_gpt":0.3575548362555531,"score_spread":0.32166100496136,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}