{"id":"W2585599304","doi":"10.1016/j.mimet.2017.01.018","title":"Utilization of a molecular serotyping method for Salmonella enterica in a routine laboratory in Alberta Canada","year":2017,"lang":"en","type":"article","venue":"Journal of Microbiological Methods","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":10,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Calgary; Government of Alberta; University of Alberta; Provincial Laboratory of Public Health","funders":"Health Canada; Public Health Agency of Canada; Canadian Food Inspection Agency","keywords":"Serotype; Salmonella; Salmonella enterica; Concordance; Outbreak; Biology; Virology; Microbiology; Bacteria; Bioinformatics; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003243217,0.0001443904,0.000664357,0.00003001376,0.00005877126,0.00001573298,0.0005012754,0.0001865545,0.00003179162],"category_scores_gemma":[0.003115311,0.00005893116,0.0001393474,0.0001577683,0.00006362253,0.00006216497,0.00009297692,0.0002065125,1.710822e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007763158,"about_ca_system_score_gemma":0.00006445921,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.05914053,"about_ca_topic_score_gemma":0.0948251,"domain_scores_codex":[0.9973208,0.001324849,0.0008087147,0.0002124747,0.00005848181,0.0002746913],"domain_scores_gemma":[0.9968542,0.001904443,0.0009209919,0.00009131242,0.0001586701,0.00007038265],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002143475,0.00007253628,0.0634258,0.0000103103,0.00001674561,0.00001287176,0.00002711307,0.00003674016,0.8936212,0.00009275959,0.00006979056,0.04239978],"study_design_scores_gemma":[0.001111341,0.0008271389,0.7952787,0.0001793817,0.00003214707,0.00007273368,0.000221241,0.0003917758,0.1851934,0.002432142,0.01395737,0.0003026596],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9921008,0.0004375871,0.005322202,0.001662621,0.0001977326,0.0001858031,0.00002319685,0.000002056338,0.00006795517],"genre_scores_gemma":[0.9165034,0.00009551243,0.08289029,0.0004201954,0.00006422644,0.000005843066,0.000006464652,0.000001322119,0.00001269784],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7318528,"threshold_uncertainty_score":0.9471247,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05303378962779211,"score_gpt":0.3654999459677379,"score_spread":0.3124661563399458,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}