{"id":"W2585608298","doi":"10.1371/journal.pone.0170050","title":"Changes in bacterial community composition of Escherichia coli O157:H7 super-shedder cattle occur in the lower intestine","year":2017,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":32,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Lethbridge; Institute for Biological Sciences; Agriculture and Agri-Food Canada","funders":"Genome Alberta; Agriculture and Agri-Food Canada; Alberta Livestock and Meat Agency","keywords":"Biology; Prevotella; Bacteroidetes; Microbiology; Escherichia coli; Feces; Microbiome; Pyrosequencing; Ruminococcus; Escherichia; Bacteria; Zoology; 16S ribosomal RNA; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002632044,0.0002228352,0.0004243896,0.0005562514,0.0003123941,0.0006011162,0.0001158694,0.00033404,0.0005822403],"category_scores_gemma":[0.0003785105,0.0002054877,0.000215223,0.0003625992,0.0002943276,0.0002513856,0.0002344993,0.0002529228,0.0001575394],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001843662,"about_ca_system_score_gemma":0.0001402117,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003279455,"about_ca_topic_score_gemma":0.004789229,"domain_scores_codex":[0.9997467,0.00003978841,0.00001861436,0.00006984136,0.00005995811,0.0000650926],"domain_scores_gemma":[0.9997451,0.00003757419,0.00007552799,0.00001112213,0.00005438101,0.00007633838],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001151393,0.0001561787,0.6562217,0.0001208583,0.0001064084,0.0003855288,0.001734908,0.0001118493,0.3316177,0.00003540384,0.00008485345,0.008273174],"study_design_scores_gemma":[0.000003400967,0.0004606122,0.9936771,0.000008943518,0.00003222021,0.0002390039,0.0009533123,0.0001767051,0.004176474,0.00001604577,0.0002501689,0.000006074013],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9996964,0.00008056729,0.00007227682,0.00000460587,0.000001332733,0.000001904511,0.00007433108,0.000001078859,0.00006757215],"genre_scores_gemma":[0.9988494,0.0001676336,0.0003309916,0.00003241957,0.000004895075,0.000006315895,0.0003131803,0.000002053438,0.0002931078],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003279455,"threshold_uncertainty_score":0.006520689,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05136664499028863,"score_gpt":0.2762067764208919,"score_spread":0.2248401314306033,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}