{"id":"W2586579175","doi":"10.1128/aem.03508-16","title":"Metagenomic and Metatranscriptomic Analyses Reveal the Structure and Dynamics of a Dechlorinating Community Containing Dehalococcoides mccartyi and Corrinoid-Providing Microorganisms under Cobalamin-Limited Conditions","year":2017,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Porphyrin Metabolism and Disorders","field":"Biochemistry, Genetics and Molecular Biology","cited_by":36,"is_retracted":false,"has_abstract":true,"ca_institutions":"National Research Council Canada","funders":"National Center for Research Resources; National Institute of Environmental Health Sciences; U.S. Department of Energy; National Institutes of Health; National Science Foundation","keywords":"Corrinoid; Cobalamin; Dehalococcoides; Biology; Metagenomics; Bacteria; Genome; Biochemistry; Microbiology; Gene; Genetics; Chemistry; Methylation; Methyltransferase","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002304981,0.0004524073,0.000466468,0.0005978431,0.0002518662,0.0006052848,0.0001885071,0.0003762774,0.0003571478],"category_scores_gemma":[0.0002628193,0.0001953922,0.0004793393,0.0005493179,0.0001650129,0.0003875763,0.0003389264,0.0003833394,0.000133022],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003226164,"about_ca_system_score_gemma":0.0003982687,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004139323,"about_ca_topic_score_gemma":0.004122653,"domain_scores_codex":[0.9997483,0.00002253873,0.00001784273,0.00008618268,0.00006848532,0.00005659155],"domain_scores_gemma":[0.99984,0.00002301494,0.00003804897,0.00001627931,0.00004522367,0.00003747641],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001045635,0.00001612793,0.004134374,0.00004587193,0.00001480993,0.00003761368,0.00005786337,0.00007344483,0.9940974,0.00001613592,0.000009454515,0.001392423],"study_design_scores_gemma":[0.00001883003,0.0006199863,0.4380899,0.00002694166,0.0001811596,0.0004665072,0.0009629924,0.005757344,0.551558,0.0001577765,0.002111807,0.00004875375],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9965154,0.0004758953,0.001431254,0.00003341064,0.000006972495,0.00002466146,0.001222627,0.00002972525,0.0002600943],"genre_scores_gemma":[0.9927495,0.0003628262,0.004023834,0.00004777138,0.000006797518,0.00004099874,0.002111652,0.00001459359,0.0006421743],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004139323,"threshold_uncertainty_score":0.008230507,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01430616057409741,"score_gpt":0.2467590041252239,"score_spread":0.2324528435511265,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}