{"id":"W2586579175","doi":"10.1128/aem.03508-16","title":"Metagenomic and Metatranscriptomic Analyses Reveal the Structure and Dynamics of a Dechlorinating Community Containing Dehalococcoides mccartyi and Corrinoid-Providing Microorganisms under Cobalamin-Limited Conditions","year":2017,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Porphyrin Metabolism and Disorders","field":"Biochemistry, Genetics and Molecular Biology","cited_by":36,"is_retracted":false,"has_abstract":true,"ca_institutions":"National Research Council Canada","funders":"National Center for Research Resources; National Institute of Environmental Health Sciences; U.S. Department of Energy; National Institutes of Health; National Science Foundation","keywords":"Corrinoid; Cobalamin; Dehalococcoides; Biology; Metagenomics; Bacteria; Genome; Biochemistry; Microbiology; Gene; Genetics; Chemistry; Methylation; Methyltransferase","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001555295,0.0001921213,0.0002715435,0.00002969564,0.0007353124,0.000043077,0.0001463172,0.000131732,0.000004264704],"category_scores_gemma":[0.00001308531,0.0001544205,0.00003041811,0.00001353762,0.001230974,0.00001007529,0.000315984,0.0001593319,1.594519e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000009180937,"about_ca_system_score_gemma":0.000009460091,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001455598,"about_ca_topic_score_gemma":0.0001833676,"domain_scores_codex":[0.999253,0.00008674429,0.0001883512,0.0002656319,0.00002157467,0.0001846881],"domain_scores_gemma":[0.9994493,0.00005046983,0.0001746282,0.0002695273,0.000004680775,0.00005144655],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003903296,0.00001619993,0.01731511,0.00002176568,0.0001344119,4.329154e-7,0.0002030223,0.000006437709,0.9809918,0.0004983308,0.000004686191,0.0007688113],"study_design_scores_gemma":[0.002064476,0.0001859912,0.2599852,0.00001176422,0.000421138,0.0002030326,0.008135959,0.0000583826,0.7269668,0.001388908,0.0002094459,0.0003688839],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9966976,0.002380028,0.0001871224,0.00005923512,0.00003271736,0.0002001193,0.000394615,0.000003972445,0.00004460772],"genre_scores_gemma":[0.9980758,0.0008281218,0.0004204385,0.0002143701,0.00001430783,0.000006540799,0.0004117098,0.00001494992,0.00001374741],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.254025,"threshold_uncertainty_score":0.6297085,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01430616057409741,"score_gpt":0.2467590041252239,"score_spread":0.2324528435511265,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}