{"id":"W2587392017","doi":"10.1111/mec.14176","title":"Local genes for local bacteria: Evidence of allopatry in the genomes of transatlantic <i>Campylobacter</i> populations","year":2017,"lang":"en","type":"article","venue":"Molecular Ecology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":41,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Agency of Canada; Canadian Food Inspection Agency; Health Canada","funders":"Japan Society for the Promotion of Science; Biotechnology and Biological Sciences Research Council; Food Standards Agency; Canada's Michael Smith Genome Sciences Centre; Health and Care Research Wales; Medical Research Council; Directorate for Biological Sciences; Wellcome; National Institute for Social Care and Health Research; Wellcome Trust","keywords":"Biology; Allopatric speciation; Genome; Gene; Evolutionary biology; Genetics; Campylobacter; Bacteria; Population","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002236114,0.000183354,0.0002810733,0.0006984879,0.0003023674,0.0004507732,0.0001675364,0.0002994667,0.0009300316],"category_scores_gemma":[0.0008174217,0.0001451558,0.000276416,0.001037658,0.0003765858,0.0002128354,0.0003770755,0.0002918018,0.0001948687],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002990436,"about_ca_system_score_gemma":0.0001906653,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003418067,"about_ca_topic_score_gemma":0.006425791,"domain_scores_codex":[0.9997627,0.00003719667,0.00001895858,0.0001124089,0.00003431588,0.0000343694],"domain_scores_gemma":[0.9991924,0.0001977048,0.0003336258,0.00008100059,0.0000864493,0.0001087365],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0006253286,0.0000533342,0.5825862,0.0002727744,0.0002111089,0.0004645523,0.002270123,0.0007420594,0.395124,0.0002696898,0.0001449966,0.01723584],"study_design_scores_gemma":[0.000006146139,0.00007655215,0.9958239,0.00001683674,0.00003831462,0.0003774249,0.0003513507,0.0003765941,0.002443464,0.00005606885,0.0004272806,0.000006072999],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9989687,0.0003488567,0.0002640804,0.00001437562,8.572094e-7,0.000004548918,0.0001896251,0.000004682845,0.0002042487],"genre_scores_gemma":[0.9986187,0.0001173426,0.0005617396,0.00001846727,0.000001667096,0.000005654317,0.0005625547,0.000004438167,0.0001093781],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003418067,"threshold_uncertainty_score":0.0067963,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05481900644202488,"score_gpt":0.2919741917996623,"score_spread":0.2371551853576375,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}