{"id":"W2587686048","doi":"10.1093/bioinformatics/btx078","title":"Kollector: transcript-informed, targeted <i>de novo</i> assembly of gene loci","year":2017,"lang":"en","type":"erratum","venue":"Bioinformatics","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":26,"is_retracted":false,"has_abstract":true,"ca_institutions":"Simon Fraser University; Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"National Human Genome Research Institute; Genome British Columbia","keywords":"Sequence assembly; Computational biology; Genome; Biology; Genomics; Pipeline (software); Caenorhabditis elegans; Gene; Homo sapiens; Computer science; Genetics; Transcriptome; Gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001397481,0.001766663,0.0008095087,0.0008219289,0.0007100852,0.001330868,0.002424821,0.001243383,0.008049193],"category_scores_gemma":[0.001915557,0.001120002,0.001242095,0.0007027729,0.0007780085,0.001162525,0.001706821,0.002072029,0.007080309],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009944532,"about_ca_system_score_gemma":0.001386752,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002360622,"about_ca_topic_score_gemma":0.0051779,"domain_scores_codex":[0.9990212,0.0001176602,0.00007814322,0.0003390918,0.0003515772,0.00009232615],"domain_scores_gemma":[0.9988893,0.0003632648,0.0001985782,0.0002971024,0.0001582448,0.00009351926],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00178617,0.0001815927,0.004188067,0.001961108,0.0002825356,0.0008772732,0.0005633851,0.02991553,0.6692915,0.006249498,0.05494447,0.2297588],"study_design_scores_gemma":[0.0003233113,0.0004300561,0.002619126,0.0001517789,0.0000948904,0.000963535,0.00011751,0.2157313,0.7135344,0.00361784,0.06218547,0.0002307296],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"software","genre_scores_codex":[0.03230827,0.0007549128,0.7966564,0.0002059898,0.0001402941,0.0003515368,0.005466085,0.1592652,0.004851175],"genre_scores_gemma":[0.1039142,0.0006309748,0.8549218,0.0006117773,0.0000623978,0.0005425164,0.01885192,0.0137978,0.006666603],"genre_candidate":"software","genre_consensus":null,"teacher_disagreement_score":0.008049193,"threshold_uncertainty_score":0.02692723,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01525223986843436,"score_gpt":0.2462272683811367,"score_spread":0.2309750285127023,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}