{"id":"W2587686048","doi":"10.1093/bioinformatics/btx078","title":"Kollector: transcript-informed, targeted <i>de novo</i> assembly of gene loci","year":2017,"lang":"en","type":"erratum","venue":"Bioinformatics","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":26,"is_retracted":false,"has_abstract":true,"ca_institutions":"Simon Fraser University; Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"National Human Genome Research Institute; Genome British Columbia","keywords":"Sequence assembly; Computational biology; Genome; Biology; Genomics; Pipeline (software); Caenorhabditis elegans; Gene; Homo sapiens; Computer science; Genetics; Transcriptome; Gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002394313,0.0005108808,0.0006715318,0.0001086205,0.0002309014,0.00007400386,0.0008837074,0.0009037052,0.00001697939],"category_scores_gemma":[0.0001827139,0.0004830977,0.0004035215,0.00006897217,0.0002188503,0.000003343309,0.000186187,0.000325899,0.00001984278],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005192828,"about_ca_system_score_gemma":0.001163775,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004490014,"about_ca_topic_score_gemma":0.0001144095,"domain_scores_codex":[0.9980025,0.00002313518,0.0008206217,0.0002643185,0.0003094441,0.0005799991],"domain_scores_gemma":[0.9976916,0.00001460993,0.0007923892,0.001087741,0.0002601372,0.0001534997],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00006332339,0.00005233603,0.00009461873,0.0007529019,0.0005266811,0.000003148315,0.0005879952,0.00002331554,0.08719363,0.00001790218,0.9088672,0.00181692],"study_design_scores_gemma":[0.000720854,0.0003739533,0.0004108007,0.00007625198,0.0001561083,0.00003281761,0.0001509446,0.0002582779,0.06699225,0.00002050017,0.9302267,0.0005804697],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"other","genre_gemma":"other","genre_scores_codex":[0.08984273,0.07090232,0.008362454,0.0005946893,0.04891129,0.003538353,0.009423,0.00008986625,0.7683353],"genre_scores_gemma":[0.1924447,0.1209935,0.1103894,0.003465115,0.01341597,0.0003643356,0.02390422,0.0008629163,0.5341598],"genre_candidate":"other","genre_consensus":"other","teacher_disagreement_score":0.2341755,"threshold_uncertainty_score":0.9997621,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01525223986843436,"score_gpt":0.2462272683811367,"score_spread":0.2309750285127023,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}