{"id":"W2587881878","doi":"10.1038/srep42609","title":"Loss of OxyR reduces efficacy of oxygen respiration in Shewanella oneidensis","year":2017,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Microbial Fuel Cells and Bioremediation","field":"Environmental Science","cited_by":22,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Fundamental Research Funds for the Central Universities; Natural Science Foundation of Zhejiang Province; National Natural Science Foundation of China; Petroleum Technology Alliance Canada","keywords":"Shewanella oneidensis; Cytochrome; Regulator; Shewanella; Cytochrome c oxidase; Respiration; Electron transport chain; Cell biology; Bacteria; Cellular respiration; Biology; Cytochrome c; Compartment (ship); Chemistry; Biochemistry; Mitochondrion; Gene; Enzyme; Genetics; Botany","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001478602,0.00007214947,0.0001450342,0.00006443303,0.0001586201,0.00007454203,0.0002085865,0.00005971968,0.0004236134],"category_scores_gemma":[0.0003452488,0.00006291288,0.00005492134,0.0001626418,0.0005247229,0.0002156165,0.0001448209,0.00004593398,0.00002764398],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004328919,"about_ca_system_score_gemma":0.00003761877,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001023941,"about_ca_topic_score_gemma":0.0009043625,"domain_scores_codex":[0.9985067,0.00002990726,0.0005004521,0.0003951014,0.0004246643,0.000143183],"domain_scores_gemma":[0.9984525,0.00001743399,0.0007131249,0.0007425567,0.00003253037,0.00004182068],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001097033,0.00007423168,0.08299136,0.00001468779,0.000001875283,0.00002595703,0.0003155858,0.0003240695,0.9120111,0.000003951333,0.002035983,0.002190214],"study_design_scores_gemma":[0.0001122428,0.00002102235,0.3078789,0.00003567308,0.000005820253,0.000007679761,0.00001704427,0.00005321671,0.6888942,0.0008181359,0.002079672,0.00007644155],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9946033,0.00002041358,0.000004930321,0.0001060442,0.001319505,0.00018274,0.000001578449,0.000005024838,0.003756504],"genre_scores_gemma":[0.9986842,0.000008807134,0.0002659561,0.000004981068,0.00002411242,0.000001466637,0.00001068592,0.000004447484,0.0009953781],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2248876,"threshold_uncertainty_score":0.4638269,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01694307701535322,"score_gpt":0.2476724385667312,"score_spread":0.230729361551378,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}