{"id":"W2588882259","doi":"10.1186/s13059-017-1151-0","title":"Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus","year":2017,"lang":"en","type":"article","venue":"Genome biology","topic":"Fungal and yeast genetics research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":507,"is_retracted":false,"has_abstract":true,"ca_institutions":"Concordia University","funders":"European Social Fund; Fundamental Research Funds for the Central Universities; Stichting voor de Technische Wetenschappen; Biotechnology and Biological Sciences Research Council; Office of Science; Novo Nordisk Fonden; Debreceni Egyetem; Javna Agencija za Raziskovalno Dejavnost RS; Ministry of Education, Science and Technology; Villum Fonden; National Research Foundation of Korea; Ministry of Science, ICT and Future Planning; Hungarian Scientific Research Fund; Saint Petersburg State University; Nederlandse Organisatie voor Wetenschappelijk Onderzoek; Koninklijke Nederlandse Akademie van Wetenschappen; National Research Foundation; Austrian Science Fund; Novo Nordisk; Bundesministerium für Bildung und Forschung; Ministry of Education of the People's Republic of China; Directorate for Biological Sciences; Joint Genome Institute; Conselho Nacional de Desenvolvimento Científico e Tecnológico; U.S. Department of Energy; National Natural Science Foundation of China; Science Foundation Ireland; University of Kansas; European Commission; Agilent Technologies; Deutsche Forschungsgemeinschaft; Fundação de Amparo à Pesquisa do Estado de São Paulo; British Mycological Society","keywords":"Biology; Human genetics; Genomics; Comparative genomics; Aspergillus; Genome Biology; Evolutionary biology; Computational biology; Functional genomics; Genetics; Genome; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005604336,0.000150174,0.0002390016,0.00004359844,0.00080926,0.00004544137,0.0004970742,0.0002862913,0.00002642316],"category_scores_gemma":[0.000125191,0.0001025699,0.00003531126,0.00003796105,0.0007609705,0.000003801684,0.001261345,0.0002267157,0.000004573008],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001574446,"about_ca_system_score_gemma":0.00006128552,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001340715,"about_ca_topic_score_gemma":0.0001959704,"domain_scores_codex":[0.9987276,0.0002212825,0.0002330661,0.0004213002,0.00008816144,0.0003086142],"domain_scores_gemma":[0.999279,0.00005806732,0.0001181563,0.0003768095,0.00005780687,0.0001102203],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003053242,0.00007442416,0.1754212,0.000005174355,0.00008352143,0.00004101186,0.0008132321,0.000005769541,0.8189685,0.001607307,0.0002120979,0.002462458],"study_design_scores_gemma":[0.000988071,0.0007572937,0.9722967,0.000003257256,0.00001025998,0.00005864705,0.0003305412,0.00001586811,0.001619122,0.00106445,0.02265225,0.0002035542],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9952627,0.00296458,0.00005505914,0.0007279171,0.0001089922,0.0002826265,0.0001286761,0.000003287545,0.0004662016],"genre_scores_gemma":[0.9945143,0.00453614,0.0002948645,0.0001605213,0.0003034778,0.00001423749,0.0001025185,0.000005427133,0.00006850479],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8173494,"threshold_uncertainty_score":0.6224256,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0959219206092633,"score_gpt":0.3075632675868045,"score_spread":0.2116413469775412,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}