{"id":"W2588882259","doi":"10.1186/s13059-017-1151-0","title":"Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus","year":2017,"lang":"en","type":"article","venue":"Genome biology","topic":"Fungal and yeast genetics research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":507,"is_retracted":false,"has_abstract":true,"ca_institutions":"Concordia University","funders":"European Social Fund; Fundamental Research Funds for the Central Universities; Stichting voor de Technische Wetenschappen; Biotechnology and Biological Sciences Research Council; Office of Science; Novo Nordisk Fonden; Debreceni Egyetem; Javna Agencija za Raziskovalno Dejavnost RS; Ministry of Education, Science and Technology; Villum Fonden; National Research Foundation of Korea; Ministry of Science, ICT and Future Planning; Hungarian Scientific Research Fund; Saint Petersburg State University; Nederlandse Organisatie voor Wetenschappelijk Onderzoek; Koninklijke Nederlandse Akademie van Wetenschappen; National Research Foundation; Austrian Science Fund; Novo Nordisk; Bundesministerium für Bildung und Forschung; Ministry of Education of the People's Republic of China; Directorate for Biological Sciences; Joint Genome Institute; Conselho Nacional de Desenvolvimento Científico e Tecnológico; U.S. Department of Energy; National Natural Science Foundation of China; Science Foundation Ireland; University of Kansas; European Commission; Agilent Technologies; Deutsche Forschungsgemeinschaft; Fundação de Amparo à Pesquisa do Estado de São Paulo; British Mycological Society","keywords":"Biology; Human genetics; Genomics; Comparative genomics; Aspergillus; Genome Biology; Evolutionary biology; Computational biology; Functional genomics; Genetics; Genome; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001605518,0.000182316,0.0001768153,0.0004961242,0.0002072808,0.0003038403,0.0001554432,0.0002770664,0.0005251942],"category_scores_gemma":[0.000212679,0.00007672206,0.0002909171,0.0005026262,0.0002231337,0.0001743702,0.0002592326,0.0003323311,0.0001724023],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001830706,"about_ca_system_score_gemma":0.0001295514,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004378024,"about_ca_topic_score_gemma":0.0006833369,"domain_scores_codex":[0.9998811,0.00001716134,0.000009239783,0.00004359924,0.00002571882,0.00002308615],"domain_scores_gemma":[0.9998376,0.00005680529,0.00003713768,0.00002006403,0.00001839962,0.00002987593],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001211553,0.00001901265,0.003453566,0.00005948465,0.00001781283,0.00008786174,0.00007291284,0.0001067335,0.992878,0.0001330807,0.00002598895,0.003024408],"study_design_scores_gemma":[0.00003040994,0.0008798784,0.7147092,0.00006206765,0.0002426735,0.003895652,0.0006812408,0.002689882,0.2656753,0.001251201,0.009848577,0.00003383505],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9947475,0.001100009,0.002084292,0.00006717355,0.00000750024,0.000009780664,0.0009588984,0.0000287772,0.0009960459],"genre_scores_gemma":[0.9928119,0.000550136,0.003523645,0.00006743606,0.000007317954,0.00001332394,0.002728993,0.0000134293,0.0002838447],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0005251942,"threshold_uncertainty_score":0.001756966,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0959219206092633,"score_gpt":0.3075632675868045,"score_spread":0.2116413469775412,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}