{"id":"W2589006132","doi":"10.1093/gbe/evx030","title":"The Complete Genome Sequence of the Phytopathogenic Fungus Sclerotinia sclerotiorum Reveals Insights into the Genome Architecture of Broad Host Range Pathogens","year":2017,"lang":"en","type":"article","venue":"Genome Biology and Evolution","topic":"Plant pathogens and resistance mechanisms","field":"Agricultural and Biological Sciences","cited_by":257,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Biotechnology and Biological Sciences Research Council; National Institute of Food and Agriculture; Directorate for Biological Sciences; Agence Nationale de la Recherche; Nederlandse Organisatie voor Wetenschappelijk Onderzoek; Curtin University of Technology; Australian Government; Grains Research and Development Corporation; Government of Western Australia; Government of Canada; Koninklijke Nederlandse Akademie van Wetenschappen; Saskatchewan Canola Development Commission; U.S. Department of Agriculture","keywords":"Sclerotinia sclerotiorum; Biology; Genome; Effector; Genetics; Gene; Virulence; Genome evolution; Botany; Cell biology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.0006291572,0.000211412,0.0003090267,0.00001383214,0.002499383,0.00004229306,0.001015568,0.0001928506,0.00001585898],"category_scores_gemma":[0.00008026144,0.00006083079,0.0001763975,0.0001590235,0.001072258,0.00005394384,0.000345033,0.0002177285,0.000006624159],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003398315,"about_ca_system_score_gemma":0.00001953542,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001498538,"about_ca_topic_score_gemma":0.001581689,"domain_scores_codex":[0.9983789,0.0003285307,0.0003799919,0.000365845,0.0001578685,0.0003889051],"domain_scores_gemma":[0.9987062,0.0001452807,0.0005753189,0.0003898111,0.000118261,0.00006508605],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00005958493,0.00001702926,0.01134951,0.00001313318,0.00002643805,9.855117e-7,0.0002442561,0.000009283297,0.9847966,0.001736552,0.000001990032,0.001744568],"study_design_scores_gemma":[0.0001457678,0.0001923902,0.9871848,0.00002836799,0.00003309883,0.00001788012,0.0001611354,0.00001546951,0.0007418277,0.005150372,0.00618202,0.0001468737],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9884138,0.008684572,0.00005033785,0.001160604,0.00033159,0.0005453741,0.0007002817,0.00001419073,0.00009920997],"genre_scores_gemma":[0.9979745,0.001445429,0.00004754967,0.00008099426,0.0002370595,0.00002701132,0.0000459788,0.000002184835,0.0001392969],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9840549,"threshold_uncertainty_score":0.9987992,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02289879212057392,"score_gpt":0.2169107662010039,"score_spread":0.19401197408043,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}