{"id":"W2589999103","doi":"10.1139/g2012-012","title":"Phylogenetics and evolution of<i>Trx SET</i>genes in fully sequenced land plants","year":2012,"lang":"en","type":"article","venue":"Genome","topic":"Plant Gene Expression Analysis","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Biology; Physcomitrella patens; Gene; Clade; Phylogenetic tree; Gene family; Phylogenetics; Genome; Genetics; Functional divergence; Evolutionary biology; Molecular evolution; Protein domain; Plant evolution","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001554615,0.00009560815,0.0001321582,0.00007324572,0.00002351855,0.000004850893,0.00009367147,0.0001028586,0.00001133156],"category_scores_gemma":[0.00001735586,0.00008963889,0.00003202424,0.00007476252,0.00003986322,0.00000325766,0.00008376161,0.00003799434,0.000006200703],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001370022,"about_ca_system_score_gemma":0.00003058275,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000379929,"about_ca_topic_score_gemma":0.00006398373,"domain_scores_codex":[0.9993265,0.00004962236,0.0001605521,0.0001664118,0.00008481931,0.0002120838],"domain_scores_gemma":[0.999648,0.000006607028,0.00006633246,0.0001810471,0.00002186809,0.00007608597],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002688553,0.00001778524,0.137586,0.000009268058,0.00001983517,9.941215e-7,0.00006111641,0.0001308244,0.8618612,0.000004883836,0.00005439117,0.0002268231],"study_design_scores_gemma":[0.0006822613,0.0001106152,0.3818316,0.00001646986,0.00003351708,0.00005155116,0.000171818,0.00007624568,0.5985992,0.00005840854,0.01806011,0.0003082618],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9931207,0.005974949,0.0003424431,0.0000169026,0.00005177529,0.00006747178,0.00008537024,0.000003628507,0.0003367138],"genre_scores_gemma":[0.9982632,0.0008208202,0.0004778213,0.00003521908,0.0001020623,0.000005560814,0.0001158607,0.000008387384,0.000171021],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2632619,"threshold_uncertainty_score":0.3655368,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01054124472663166,"score_gpt":0.2348846759422399,"score_spread":0.2243434312156082,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}