{"id":"W2589999103","doi":"10.1139/g2012-012","title":"Phylogenetics and evolution of<i>Trx SET</i>genes in fully sequenced land plants","year":2012,"lang":"en","type":"article","venue":"Genome","topic":"Plant Gene Expression Analysis","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Biology; Physcomitrella patens; Gene; Clade; Phylogenetic tree; Gene family; Phylogenetics; Genome; Genetics; Functional divergence; Evolutionary biology; Molecular evolution; Protein domain; Plant evolution","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001412421,0.0002483077,0.0003476334,0.0007755758,0.0003481586,0.0004375742,0.0002785531,0.0002363414,0.0007753674],"category_scores_gemma":[0.0002945555,0.0002131691,0.0003227151,0.0008117746,0.0002378152,0.000293798,0.0004080653,0.0003179019,0.0004573033],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002698036,"about_ca_system_score_gemma":0.0002691289,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001150186,"about_ca_topic_score_gemma":0.001448362,"domain_scores_codex":[0.9998749,0.00000982926,0.0000102856,0.0000531524,0.00003187689,0.00001997401],"domain_scores_gemma":[0.9997187,0.00006629045,0.00006441262,0.00003036144,0.00005087034,0.00006935343],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0004181424,0.00002890765,0.02382892,0.0002248064,0.00005202569,0.0002772572,0.0006652896,0.0005121693,0.95612,0.0002672217,0.00009350746,0.01751166],"study_design_scores_gemma":[0.00002940375,0.0002302713,0.9374656,0.00008920099,0.0001904187,0.002060454,0.0005531991,0.002396952,0.04056256,0.000510148,0.01586339,0.00004849945],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9946927,0.000871283,0.001637184,0.00002062804,0.00000546757,0.00001282721,0.001716817,0.00003808014,0.001004911],"genre_scores_gemma":[0.9768627,0.0009637802,0.006024411,0.00006823061,0.00001300724,0.00005573378,0.01410369,0.00006116361,0.001847241],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001150186,"threshold_uncertainty_score":0.002593875,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01054124472663166,"score_gpt":0.2348846759422399,"score_spread":0.2243434312156082,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}