{"id":"W2590387765","doi":"10.1016/j.jaut.2017.01.009","title":"The common, autoimmunity-predisposing 620Arg &gt; Trp variant of PTPN22 modulates macrophage function and morphology","year":2017,"lang":"en","type":"article","venue":"Journal of Autoimmunity","topic":"Diabetes and associated disorders","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":false,"ca_institutions":"McGill University; McGill University Health Centre","funders":"Fonds de Recherche du Québec - Santé; Canadian Institutes of Health Research; National Institutes of Health","keywords":"PTPN22; Immunology; Immune system; Biology; CD8; Allele; Autoimmunity; T cell; Single-nucleotide polymorphism; Protein tyrosine phosphatase; Autoimmune disease; Spleen; Genotype; Antibody; Genetics; Receptor; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001891863,0.0005197157,0.0004171692,0.0002695161,0.0002798474,0.0002781057,0.0002844222,0.0007489674,0.002989951],"category_scores_gemma":[0.0006102104,0.0001112242,0.0003552684,0.0002474255,0.0003842192,0.0001760243,0.0002986111,0.0004738031,0.0004705323],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001363959,"about_ca_system_score_gemma":0.0001290186,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000530184,"about_ca_topic_score_gemma":0.0005862964,"domain_scores_codex":[0.9997894,0.0000459482,0.00002897206,0.00006265824,0.00003770911,0.00003531501],"domain_scores_gemma":[0.9997353,0.00005556987,0.00008103099,0.00003287931,0.00002020664,0.00007491098],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001411407,0.0001280466,0.02609011,0.00006063812,0.00008142284,0.02297691,0.000212823,0.0001339685,0.9416032,0.0005423307,0.0003400772,0.006419154],"study_design_scores_gemma":[0.0003342166,0.002355373,0.5499505,0.00008468002,0.0005734362,0.2463939,0.0008006879,0.002608146,0.1838522,0.003372333,0.009545838,0.0001287202],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9980409,0.0002902143,0.0007598503,0.000127646,0.00003420441,0.000007876361,0.0001071527,0.00002246683,0.0006098844],"genre_scores_gemma":[0.9991455,0.00007565328,0.0002568469,0.00004982383,0.00002031824,0.000005110915,0.00004657691,0.000009707373,0.0003904577],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002989951,"threshold_uncertainty_score":0.01000237,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007690426576343824,"score_gpt":0.2406775237063577,"score_spread":0.2329870971300138,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}