{"id":"W2592066452","doi":"10.1101/111914","title":"Genomic epidemiology of global <i>Klebsiella pneumoniae</i> carbapenemase (KPC)-producing <i>Escherichia coli</i>","year":2017,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary; Calgary Laboratory Services","funders":"","keywords":"Mobile genetic elements; Replicon; Transposable element; Plasmid; Whole genome sequencing; Genome; Gene; DNA Transposable Elements; Genetic diversity","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002031252,0.0002306307,0.00016071,0.0008613783,0.000165369,0.0005302866,0.0001240558,0.0002365026,0.001099741],"category_scores_gemma":[0.0005029028,0.00009634428,0.0002201061,0.001306182,0.0002725781,0.0002150117,0.0004222476,0.0002279242,0.0001747833],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003121691,"about_ca_system_score_gemma":0.0003823717,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.009344693,"about_ca_topic_score_gemma":0.009289211,"domain_scores_codex":[0.9997895,0.0000307203,0.00001502449,0.00008486648,0.00004248124,0.00003743779],"domain_scores_gemma":[0.9994842,0.00004299424,0.0002589788,0.0000223626,0.0001034562,0.0000880302],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001179599,0.00001634659,0.9713983,0.0001188436,0.00006762619,0.0001764203,0.0003637565,0.0002503216,0.02040359,0.0001255363,0.0004523575,0.006508968],"study_design_scores_gemma":[0.000001398831,0.00004258577,0.9981262,0.00001690573,0.00001771366,0.0002377274,0.0003145901,0.0001060297,0.0004608084,0.00002723668,0.0006457315,0.000003144685],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9968293,0.0003581265,0.0003337557,0.00006389899,0.000003876522,0.000009816635,0.001685919,0.00001071634,0.0007045405],"genre_scores_gemma":[0.9975078,0.0003400777,0.0004195943,0.00005345122,0.000007087584,0.000006790746,0.001495763,0.000004776657,0.0001645257],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.009344693,"threshold_uncertainty_score":0.01858062,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0162830157001448,"score_gpt":0.2515694942735616,"score_spread":0.2352864785734168,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}