{"id":"W2592626994","doi":"10.1186/s12864-017-3568-y","title":"Conserved expression of transposon-derived non-coding transcripts in primate stem cells","year":2017,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":58,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University and Génome Québec Innovation Centre; McGill University","funders":"National Institute of Mental Health; National Cancer Institute; National Institutes of Health; Canadian Institutes of Health Research; Leona M. and Harry B. Helmsley Charitable Trust; Compute Canada; Fonds de Recherche du Québec - Santé; Foundation for the National Institutes of Health; G. Harold and Leila Y. Mathers Charitable Foundation; Paul G. Allen Family Foundation","keywords":"Biology; Transposable element; DNA microarray; Stem cell; Genetics; Conserved sequence; Computational biology; Evolutionary biology; Gene expression; Genome; Gene; Base sequence","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000159091,0.0002097528,0.0001872012,0.0005921698,0.0002881064,0.0003044019,0.00015619,0.000237658,0.001260264],"category_scores_gemma":[0.0002714329,0.00009970388,0.0002086261,0.0004884823,0.0002634271,0.0001397105,0.0002384389,0.0002424161,0.0003413341],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002192189,"about_ca_system_score_gemma":0.0001697052,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006096805,"about_ca_topic_score_gemma":0.00111812,"domain_scores_codex":[0.9998658,0.00001242086,0.000008369464,0.00006390601,0.00003323612,0.0000162559],"domain_scores_gemma":[0.9998627,0.00003229676,0.00005043385,0.00001703894,0.00001938004,0.00001813177],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00009237173,0.000007930327,0.006604373,0.0001259904,0.00002334367,0.0004611578,0.0002545753,0.0002561407,0.9813464,0.0005167451,0.00009056843,0.01022034],"study_design_scores_gemma":[0.00002398643,0.0004897931,0.3269828,0.0001220982,0.0002373615,0.009973537,0.0008151312,0.006683314,0.6118513,0.002678945,0.04008454,0.00005729498],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9840242,0.002214974,0.008380372,0.00006260816,0.00001623845,0.00003077257,0.001851596,0.0001850282,0.003234275],"genre_scores_gemma":[0.9870896,0.0007515359,0.008018259,0.00006131707,0.00001336191,0.00003649568,0.002542539,0.00006449765,0.001422363],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001260264,"threshold_uncertainty_score":0.004215956,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04660027026062338,"score_gpt":0.2330580127555505,"score_spread":0.1864577424949272,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}