{"id":"W2592626994","doi":"10.1186/s12864-017-3568-y","title":"Conserved expression of transposon-derived non-coding transcripts in primate stem cells","year":2017,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":58,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University and Génome Québec Innovation Centre; McGill University","funders":"National Institute of Mental Health; National Cancer Institute; National Institutes of Health; Canadian Institutes of Health Research; Leona M. and Harry B. Helmsley Charitable Trust; Compute Canada; Fonds de Recherche du Québec - Santé; Foundation for the National Institutes of Health; G. Harold and Leila Y. Mathers Charitable Foundation; Paul G. Allen Family Foundation","keywords":"Biology; Transposable element; DNA microarray; Stem cell; Genetics; Conserved sequence; Computational biology; Evolutionary biology; Gene expression; Genome; Gene; Base sequence","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001036969,0.00009163142,0.0001664954,0.000007231053,0.00019289,0.00004230779,0.0003039563,0.00007128575,0.00005367117],"category_scores_gemma":[0.000003920779,0.00004157157,0.00007840044,0.000035159,0.00004449868,0.00006180144,0.00003030902,0.00005108368,0.0000071756],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001557029,"about_ca_system_score_gemma":0.00001724563,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002125685,"about_ca_topic_score_gemma":0.002394909,"domain_scores_codex":[0.9993346,0.0000289664,0.0002248221,0.0001780588,0.00007298194,0.0001605437],"domain_scores_gemma":[0.9996507,0.00005240008,0.0001275041,0.00009699503,0.00002324268,0.00004920555],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002965689,0.00004437976,0.01134495,0.00001786178,0.000001910115,0.000001004088,0.0004242937,0.00004083313,0.9863074,0.00002347845,0.000004511405,0.001759698],"study_design_scores_gemma":[0.0002914793,0.00004056191,0.2389298,0.00003557099,0.000005754601,5.975037e-7,0.0001715553,0.0002270093,0.7598495,0.00009920152,0.0002604192,0.00008859077],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9990049,0.00004087228,0.00006966963,0.0001694845,0.0001236625,0.0002046115,0.00007082997,0.000009817101,0.0003061572],"genre_scores_gemma":[0.9991071,0.00005674534,0.0006884729,0.00001731604,0.00004626716,0.000007918768,0.000008794631,9.81106e-7,0.00006640179],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2275848,"threshold_uncertainty_score":0.1695239,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04660027026062338,"score_gpt":0.2330580127555505,"score_spread":0.1864577424949272,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}