{"id":"W2592954192","doi":"10.12688/f1000research.10609.1","title":"Escherichia coli ST131: a multidrug-resistant clone primed for global domination","year":2017,"lang":"en","type":"preprint","venue":"F1000Research","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":241,"is_retracted":false,"has_abstract":true,"ca_institutions":"Calgary Laboratory Services; University of Calgary","funders":"Calgary Laboratory Services","keywords":"Clade; Biology; Genetics; clone (Java method); Plasmid; Gene; Population; Escherichia coli; Subclade; Multiple drug resistance; Phylogenetics; Drug resistance; Medicine","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00111633,0.0004339214,0.0004933639,0.00006838648,0.0003657043,0.0003796594,0.001542747,0.0008718593,0.0000438874],"category_scores_gemma":[0.001541679,0.0004378069,0.0003123483,0.00006955877,0.0004564618,0.000007218217,0.001805207,0.0004258937,0.00003055171],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002423854,"about_ca_system_score_gemma":0.001067753,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001782782,"about_ca_topic_score_gemma":0.0002131499,"domain_scores_codex":[0.996731,0.0002343183,0.0004850215,0.001152743,0.0006173856,0.0007794856],"domain_scores_gemma":[0.9967127,0.00006420696,0.0003929078,0.001865634,0.0007292915,0.0002352587],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.003167955,0.0002830965,0.004899097,0.000861305,0.0003714363,0.00002025117,0.00004272174,0.00004872846,0.9639302,0.0007903601,0.02183029,0.0037546],"study_design_scores_gemma":[0.006686762,0.001280056,0.2080553,0.0008373545,0.0002442693,0.00001007465,0.0002104654,0.003377066,0.5556415,0.006340486,0.2148639,0.002452715],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9813681,0.001160182,0.008103652,0.0005972217,0.0009030917,0.002997762,0.001209495,0.00004682399,0.003613735],"genre_scores_gemma":[0.970219,0.0006068981,0.01564076,0.00005641726,0.001082242,0.0004058074,0.002262231,0.0001060974,0.009620588],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4082886,"threshold_uncertainty_score":0.9998074,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03500007856755098,"score_gpt":0.3677780318251848,"score_spread":0.3327779532576338,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}