{"id":"W2592954192","doi":"10.12688/f1000research.10609.1","title":"Escherichia coli ST131: a multidrug-resistant clone primed for global domination","year":2017,"lang":"en","type":"preprint","venue":"F1000Research","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":241,"is_retracted":false,"has_abstract":true,"ca_institutions":"Calgary Laboratory Services; University of Calgary","funders":"Calgary Laboratory Services","keywords":"Clade; Biology; Genetics; clone (Java method); Plasmid; Gene; Population; Escherichia coli; Subclade; Multiple drug resistance; Phylogenetics; Drug resistance; Medicine","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001441577,0.0004287196,0.000174145,0.0002333874,0.0002084331,0.000222658,0.0002088206,0.0004398839,0.001553027],"category_scores_gemma":[0.0002099243,0.0001009831,0.0001651661,0.0002661163,0.0002094876,0.0001829701,0.000514937,0.0005664023,0.0007697025],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004169955,"about_ca_system_score_gemma":0.0004986568,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002432613,"about_ca_topic_score_gemma":0.002683398,"domain_scores_codex":[0.999858,0.0000166939,0.000008746514,0.00002772195,0.00005888409,0.00002990425],"domain_scores_gemma":[0.9999572,0.000005566764,0.000009121873,0.000007445843,0.000009743855,0.00001088092],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00009465869,0.00006151474,0.004389114,0.00008036153,0.00001163873,0.0002816276,0.00005334198,0.0000984151,0.9817963,0.001138431,0.001719911,0.01027473],"study_design_scores_gemma":[0.0001394384,0.0008636871,0.139327,0.00006627245,0.00006525109,0.003399307,0.0002443109,0.002000254,0.7748731,0.001402411,0.07756501,0.00005397931],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9724148,0.001097988,0.007198989,0.0009640428,0.0001350079,0.0002507442,0.004473165,0.0003173027,0.01314781],"genre_scores_gemma":[0.9476452,0.001175473,0.01463081,0.0004188939,0.00004096963,0.0001417138,0.01461499,0.00007127847,0.02126056],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002432613,"threshold_uncertainty_score":0.005195379,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03500007856755098,"score_gpt":0.3677780318251848,"score_spread":0.3327779532576338,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}