{"id":"W2593635259","doi":"10.1016/j.cub.2017.02.003","title":"Lateral Gene Transfer in the Adaptation of the Anaerobic Parasite Blastocystis to the Gut","year":2017,"lang":"en","type":"article","venue":"Current Biology","topic":"Parasitic Infections and Diagnostics","field":"Immunology and Microbiology","cited_by":124,"is_retracted":false,"has_abstract":false,"ca_institutions":"Canadian Institute for Advanced Research; Dalhousie University","funders":"Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs","keywords":"Biology; Blastocystis; Gene; Horizontal gene transfer; Virulence; Adaptation (eye); Microbiology; Organism; Host adaptation; Genetics; Microbiome; Genome","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002592242,0.00009627744,0.000136,0.00003847902,0.0004051196,0.00001314421,0.0005038443,0.0001046377,0.00005056282],"category_scores_gemma":[0.0001677777,0.00004459949,0.00007110829,0.00006848611,0.0003173353,0.00002700729,0.00005311588,0.00021682,0.000120524],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001303111,"about_ca_system_score_gemma":0.00003306179,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003431661,"about_ca_topic_score_gemma":0.001080869,"domain_scores_codex":[0.9991355,0.000305052,0.0001925733,0.0001432392,0.00001676002,0.0002068821],"domain_scores_gemma":[0.9992048,0.0001974383,0.00006183559,0.0004907061,0.00003892165,0.000006372545],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002991195,0.0007920164,0.5594874,0.00003300816,0.0002449512,0.00000437631,0.01143478,0.001244452,0.2323509,0.05929477,0.006789557,0.1280247],"study_design_scores_gemma":[0.0007362107,0.0001787227,0.9166353,0.00003018235,0.00004677446,0.00003436415,0.00008638983,0.00003301697,0.006494062,0.0003669211,0.07525196,0.0001061215],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9933711,0.0008756968,0.001644484,0.001323669,0.002174589,0.000357322,0.00007409242,0.000006133359,0.0001729654],"genre_scores_gemma":[0.9995253,0.00009298008,0.00001043482,0.0001709716,0.00005495,0.00005621542,0.000033329,0.000003611084,0.00005217337],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3571479,"threshold_uncertainty_score":0.3115893,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03700699444626093,"score_gpt":0.311537005509197,"score_spread":0.2745300110629361,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}