{"id":"W2594442246","doi":"10.1139/facets-2016-0018","title":"Characterization of “<i>Brachyspira hampsonii</i>” clades I and II isolated from commercial swine in Western Canada","year":2016,"lang":"en","type":"article","venue":"FACETS","topic":"Veterinary medicine and infectious diseases","field":"Veterinary","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan","funders":"Canadian Swine Health Board","keywords":"Clade; Biology; Pathogen; Multilocus sequence typing; Microbiology; Virulence; Gene; Phylogenetics; Genetics; Genotype","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":true,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00004782507,0.0001356874,0.0002483983,0.00006125791,0.0000521975,0.000006655161,0.00008027029,0.00006237016,0.0002718151],"category_scores_gemma":[0.0000334949,0.0001022463,0.000020805,0.00008342231,0.00004873794,0.0002548904,0.00008667429,0.00006304521,0.00000636938],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005273993,"about_ca_system_score_gemma":0.00009004537,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.1255555,"about_ca_topic_score_gemma":0.103353,"domain_scores_codex":[0.9991519,0.0000728041,0.0002743897,0.0001986775,0.00012659,0.0001756675],"domain_scores_gemma":[0.9995596,0.00005127332,0.0001041072,0.0001727081,0.00003344292,0.00007882513],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0004192272,0.0001259556,0.4153921,0.00003038423,0.00002789655,0.0001172756,0.0003930639,1.932143e-7,0.5766075,0.000004967063,0.000331589,0.006549841],"study_design_scores_gemma":[0.001413707,0.001052851,0.9857802,0.0001964646,0.00001591182,0.00003854803,0.00002343062,0.00002590435,0.002496353,0.00001774445,0.008784653,0.0001542545],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9980344,0.00006460009,0.00009395806,0.0009814452,0.000203909,0.0001545362,0.0003192376,0.00003114985,0.0001167859],"genre_scores_gemma":[0.9991443,0.00004961514,0.000006320826,0.0004559466,0.0001047152,0.00001075698,0.0000848935,0.00001652366,0.0001269547],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5741112,"threshold_uncertainty_score":0.9130085,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02834763071049028,"score_gpt":0.270019836925367,"score_spread":0.2416722062148767,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}