{"id":"W2594568399","doi":"10.1038/srep43465","title":"Parasitism perturbs the mucosal microbiome of Atlantic Salmon","year":2017,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":171,"is_retracted":false,"has_abstract":true,"ca_institutions":"Cooke Aquaculture (Canada); Université Laval; Fisheries and Oceans Canada","funders":"Biotechnology and Biological Sciences Research Council; Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Salmo; Vibrio; Mucus; Microbiome; Lepeophtheirus; Zoology; Context (archaeology); Host (biology); Ecology; Beta diversity; Parasitism; Colonisation; Flavobacterium; Species richness; Microbiology; Fish <Actinopterygii>; Fishery; Bacteria; Pseudomonas; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.0007641343,0.0001631884,0.0002257049,0.00007954,0.001357925,0.0002311984,0.000591981,0.0001157109,0.0004932961],"category_scores_gemma":[0.0001293409,0.0001029677,0.0001809864,0.00008633871,0.001363132,0.0001467684,0.0002905738,0.0001355588,0.0003204192],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001525949,"about_ca_system_score_gemma":0.00005837449,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001958637,"about_ca_topic_score_gemma":0.00005688256,"domain_scores_codex":[0.9986315,0.00006806504,0.000379783,0.0005200596,0.00006259287,0.0003380155],"domain_scores_gemma":[0.9975695,0.00002501457,0.0005804186,0.00169617,0.0001056107,0.00002328447],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00001594243,0.00007612265,0.009696334,0.0000243461,0.0001063267,0.0001026531,0.0002670719,4.77167e-7,0.8211091,0.0004708026,0.1672472,0.000883623],"study_design_scores_gemma":[0.0005094348,0.00003586115,0.06539682,0.00008282896,0.0002099435,0.0005834706,0.0002372789,0.000001544755,0.2296032,0.001297394,0.7017246,0.0003175052],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.983252,0.00142598,0.00002219835,0.0008225871,0.009331725,0.0003796085,0.00001249893,0.00004456608,0.004708778],"genre_scores_gemma":[0.9666502,0.00001011306,0.00002187978,0.00004331423,0.00003118178,0.000008451401,0.0002564978,0.00001067728,0.03296762],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5915059,"threshold_uncertainty_score":0.9999422,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01171733609334496,"score_gpt":0.2456585896411605,"score_spread":0.2339412535478156,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}