{"id":"W2594568399","doi":"10.1038/srep43465","title":"Parasitism perturbs the mucosal microbiome of Atlantic Salmon","year":2017,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":171,"is_retracted":false,"has_abstract":true,"ca_institutions":"Cooke Aquaculture (Canada); Université Laval; Fisheries and Oceans Canada","funders":"Biotechnology and Biological Sciences Research Council; Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Salmo; Vibrio; Mucus; Microbiome; Lepeophtheirus; Zoology; Context (archaeology); Host (biology); Ecology; Beta diversity; Parasitism; Colonisation; Flavobacterium; Species richness; Microbiology; Fish <Actinopterygii>; Fishery; Bacteria; Pseudomonas; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001508171,0.0001372541,0.0001921256,0.0001380666,0.0001739593,0.0002635525,0.00007319535,0.0002179584,0.0008433416],"category_scores_gemma":[0.0003780237,0.000138827,0.0001452052,0.0001079441,0.0001858754,0.0001373088,0.0003668124,0.0002995647,0.0001398769],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001913291,"about_ca_system_score_gemma":0.0002724342,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002367097,"about_ca_topic_score_gemma":0.004076059,"domain_scores_codex":[0.9998579,0.00002626123,0.00001199498,0.00002973768,0.0000370211,0.00003691731],"domain_scores_gemma":[0.999866,0.00001270944,0.00005611082,0.000009235978,0.00001897994,0.00003691972],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0004675509,0.00005296859,0.09040609,0.00006705915,0.00002281947,0.000159338,0.0003175127,0.00008187295,0.904012,0.00003007953,0.0001032489,0.004279417],"study_design_scores_gemma":[0.000006174768,0.0006460806,0.9775562,0.00001190549,0.00002655726,0.0003115449,0.0004838905,0.0003528512,0.01997704,0.00004871946,0.0005716225,0.000007436566],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9995645,0.0001379864,0.00006066504,0.00002538057,0.000002843957,0.000003182579,0.00003979952,0.000003309463,0.0001622468],"genre_scores_gemma":[0.9992454,0.0001455389,0.000131439,0.00004077585,0.00000242286,0.000004931801,0.00008142561,0.000002061405,0.0003460775],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002367097,"threshold_uncertainty_score":0.004706621,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01171733609334496,"score_gpt":0.2456585896411605,"score_spread":0.2339412535478156,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}