{"id":"W2594621310","doi":"10.1038/srep43613","title":"Chromatin states shape insertion profiles of the piggyBac, Tol2 and Sleeping Beauty transposons and murine leukemia virus","year":2017,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Genomics and Chromatin Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":62,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Institute of Genetics; National Cancer Institute; Precursory Research for Embryonic Science and Technology; Japan Science and Technology Agency; Japan Society for the Promotion of Science","keywords":"Chromatin; CTCF; Cohesin; Biology; Transposable element; Transposase; Genetics; Murine leukemia virus; Gene; Cell biology; Histone; Genome; Enhancer; Molecular biology; Transcription factor","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004129766,0.00009780493,0.0001131754,0.00002062435,0.0005038204,0.0001412953,0.0001402153,0.00006505826,0.000006472952],"category_scores_gemma":[0.00007724018,0.00007442381,0.00004397136,0.00002940398,0.0004026347,0.000009045736,0.0001601398,0.00004672356,2.380115e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001185761,"about_ca_system_score_gemma":0.0000885047,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00008106852,"about_ca_topic_score_gemma":0.0002315933,"domain_scores_codex":[0.9990934,0.00001929418,0.0002540075,0.0003643893,0.0001201401,0.0001487707],"domain_scores_gemma":[0.9988796,0.000004234402,0.0003285577,0.0006787683,0.00005903117,0.00004984911],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000005977939,0.0000139018,0.02075333,0.00005551981,0.00001541836,0.00000464385,0.000146072,0.00004401411,0.9770299,0.00001663214,0.0001632985,0.001751271],"study_design_scores_gemma":[0.0002150659,0.00005740362,0.2556649,0.00006725538,0.00002918772,0.0001074823,0.0000707854,0.004088762,0.7353332,0.001514168,0.002683698,0.0001681306],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9986114,0.0003147361,0.00005163082,0.0001058297,0.0005678855,0.0001909035,0.0000173433,0.00000475677,0.0001355115],"genre_scores_gemma":[0.9991584,0.00008282593,0.0003774374,0.00001273778,0.00002851517,0.000007936738,0.00005533426,0.000009518752,0.0002672577],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2416967,"threshold_uncertainty_score":0.387503,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007337713038203703,"score_gpt":0.2222307653550468,"score_spread":0.2148930523168431,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}