{"id":"W2594750419","doi":"10.1038/srep43438","title":"Phage-host interactions in Streptococcus thermophilus: Genome analysis of phages isolated in Uruguay and ectopic spacer acquisition in CRISPR array","year":2017,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":57,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval","funders":"Foreign Affairs and International Trade Canada; Agência Nacional de Inovação; Badan Riset dan Inovasi Nasional; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs; Agencia Nacional de Investigación e Innovación","keywords":"Streptococcus thermophilus; Biology; Genetics; Genome; Bacteriophage; Mutant; Gene; Bacteria; Escherichia coli","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0005667737,0.0001328412,0.000277997,0.0005149569,0.0002287484,0.000289718,0.0001482224,0.00004953376,0.002680407],"category_scores_gemma":[0.00006420937,0.0001263992,0.0000849486,0.0007123916,0.0003549336,0.0007294906,0.0001423652,0.0001632101,0.00001878687],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000178256,"about_ca_system_score_gemma":0.00002095002,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004875327,"about_ca_topic_score_gemma":0.04187344,"domain_scores_codex":[0.9984108,0.00005777616,0.0005384039,0.000604557,0.000143959,0.0002445212],"domain_scores_gemma":[0.9987513,0.00003056591,0.0004219676,0.0007213,0.00001712362,0.00005774797],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000008972379,0.000139099,0.233771,0.000005249375,0.00002416749,0.0001177643,0.001288645,0.0004062648,0.7636542,0.000001107265,0.00004141315,0.0005420411],"study_design_scores_gemma":[0.0001677057,0.00001304684,0.9838077,0.00004500116,0.00004284623,0.00001733104,0.0002185203,0.0003956025,0.01430811,0.000101764,0.0007628605,0.000119478],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9966797,0.00004682918,0.00005982001,0.0001733534,0.0007937992,0.0002897003,0.00001050714,0.000009195204,0.001937127],"genre_scores_gemma":[0.9986395,0.0000156702,0.00007007104,0.00001469361,0.00001128028,0.00002138307,0.0000284056,0.000007876934,0.00119109],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7500367,"threshold_uncertainty_score":0.9982313,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0111555887560207,"score_gpt":0.278882985663253,"score_spread":0.2677273969072323,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}