{"id":"W2594929889","doi":"10.1186/s12866-017-0962-1","title":"Comparative genomics of Enterococcus spp. isolated from bovine feces","year":2017,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":97,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Food Inspection Agency; Agriculture and Agri-Food Canada","funders":"Beef Cattle Research Council; Agriculture and Agri-Food Canada; Government of Canada","keywords":"Enterococcus hirae; Enterococcus faecium; Biology; Enterococcus; Enterococcus faecalis; Microbiology; Antibiotic resistance; Antibiotics; Bacteria; Genetics; Staphylococcus aureus","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001034382,0.0002331796,0.0008415165,0.00007558458,0.000160457,0.00002275674,0.0004199959,0.0002258486,0.0004274708],"category_scores_gemma":[0.0001107071,0.0002022154,0.000173461,0.00004090849,0.00069389,0.00006044846,0.0002015669,0.0002054947,0.0002461407],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007610838,"about_ca_system_score_gemma":0.0001591386,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002967542,"about_ca_topic_score_gemma":0.0008118441,"domain_scores_codex":[0.9986959,0.00007235837,0.0004614209,0.0004035105,0.00003930356,0.0003274769],"domain_scores_gemma":[0.9982179,0.0001418817,0.0005466762,0.0008439317,0.0001655792,0.00008399348],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001619282,0.0001231219,0.06808355,0.00004536787,0.0001589487,0.00001472943,0.0002364926,0.000001699824,0.9244718,0.00002554953,0.005129289,0.00009019365],"study_design_scores_gemma":[0.004830427,0.000944259,0.1978575,0.0002841931,0.0002604525,0.00007610235,0.0002716211,0.00008961531,0.7439144,0.0001436996,0.05089077,0.0004369415],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9945881,0.0006786503,0.001350787,0.0001593696,0.0003481449,0.0004504985,0.0004766029,0.0000364646,0.001911356],"genre_scores_gemma":[0.9941019,0.00007802977,0.004450983,0.0001833589,0.0001392303,0.000006610523,0.0002215605,0.00002172845,0.0007966092],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1805573,"threshold_uncertainty_score":0.8246106,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0380680680278237,"score_gpt":0.3099876551407595,"score_spread":0.2719195871129358,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}