{"id":"W2594929889","doi":"10.1186/s12866-017-0962-1","title":"Comparative genomics of Enterococcus spp. isolated from bovine feces","year":2017,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":97,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Food Inspection Agency; Agriculture and Agri-Food Canada","funders":"Beef Cattle Research Council; Agriculture and Agri-Food Canada; Government of Canada","keywords":"Enterococcus hirae; Enterococcus faecium; Biology; Enterococcus; Enterococcus faecalis; Microbiology; Antibiotic resistance; Antibiotics; Bacteria; Genetics; Staphylococcus aureus","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001416305,0.0003969619,0.0003515659,0.0008334543,0.0002668732,0.0004891411,0.0001918004,0.0003239747,0.0009498613],"category_scores_gemma":[0.0003256987,0.0001221792,0.0003512974,0.001002137,0.0001888561,0.0001323961,0.0003049347,0.0003621854,0.0004038479],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003098604,"about_ca_system_score_gemma":0.0002020535,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003383721,"about_ca_topic_score_gemma":0.003380708,"domain_scores_codex":[0.9997818,0.0000198889,0.00001462934,0.00006884944,0.00005250472,0.00006228588],"domain_scores_gemma":[0.9996934,0.00006081497,0.00009065958,0.0000148571,0.00008415661,0.00005616205],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002663173,0.00004336347,0.005918457,0.0001146087,0.00001859454,0.000178987,0.0002006934,0.00005067137,0.9904157,0.00002669241,0.00005228593,0.002713631],"study_design_scores_gemma":[0.00002095797,0.001086463,0.7885882,0.00007414856,0.0001901238,0.003130607,0.001218306,0.0009598544,0.1959528,0.00009558483,0.008660392,0.0000225385],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9930883,0.001246499,0.001295265,0.00005283645,0.00001413782,0.00002657156,0.002766686,0.00002331453,0.001486467],"genre_scores_gemma":[0.9815577,0.0007692649,0.003990605,0.0001323342,0.00001599492,0.00003681262,0.01169289,0.00003429854,0.001770021],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003383721,"threshold_uncertainty_score":0.006728053,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0380680680278237,"score_gpt":0.3099876551407595,"score_spread":0.2719195871129358,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}