{"id":"W2594939779","doi":"10.1534/genetics.116.197541","title":"Prophage Provide a Safe Haven for Adaptive Exploration in Temperate Viruses","year":2017,"lang":"en","type":"article","venue":"Genetics","topic":"Evolution and Genetic Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"ca_institutions":"Western University","funders":"","keywords":"Prophage; Biology; Lytic cycle; Genetics; Temperate climate; Genetic Fitness; Mutation; Evolutionary biology; Virus; Gene; Ecology; Bacteriophage; Escherichia coli","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003256764,0.0004197954,0.0005156836,0.000416455,0.0004487864,0.0008827116,0.0004432611,0.0007677543,0.001861719],"category_scores_gemma":[0.0007261172,0.0003351977,0.0004032872,0.0001649034,0.0006150564,0.001459487,0.0008086521,0.0007449477,0.0006746614],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003843424,"about_ca_system_score_gemma":0.0003199604,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004611595,"about_ca_topic_score_gemma":0.0005163911,"domain_scores_codex":[0.9998778,0.00002779114,0.000005236641,0.00003015767,0.00002290014,0.00003606961],"domain_scores_gemma":[0.9996378,0.0001257305,0.00009430421,0.00005404698,0.00002764056,0.0000604626],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000359227,0.0000662029,0.02348193,0.0002030106,0.00005561169,0.0007655087,0.0003267153,0.01221932,0.9193231,0.02900032,0.0002053298,0.01399374],"study_design_scores_gemma":[0.0001761775,0.002942014,0.1482199,0.0002334578,0.0002069306,0.009257563,0.002264507,0.2563426,0.3596435,0.1910406,0.02947645,0.0001964526],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9626979,0.001658817,0.03207733,0.0003411278,0.00002289828,0.00001595962,0.0001047984,0.00009293646,0.002988085],"genre_scores_gemma":[0.9932994,0.0006524128,0.004539446,0.00007028119,0.00001431256,0.00001856937,0.00009845725,0.0000214376,0.001285732],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001861719,"threshold_uncertainty_score":0.006228089,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04429967186695968,"score_gpt":0.311771345939695,"score_spread":0.2674716740727353,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}