{"id":"W2597908507","doi":"10.1128/genomea.01584-16","title":"Draft Genome Sequence of the Pelagic Photoferrotroph <i>Chlorobium phaeoferrooxidans</i>","year":2017,"lang":"en","type":"article","venue":"Genome Announcements","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":32,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; BC Cancer Agency; University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Biology; Pelagic zone; Evolutionary biology; Whole genome sequencing; Genome; Sequence (biology); Genetics; Ecology; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0003206091,0.0001953386,0.0002454713,0.00001950649,0.001256354,0.00003111121,0.00230775,0.0001122114,0.005938525],"category_scores_gemma":[0.00003627919,0.0001533163,0.0001127247,0.00009611896,0.001105529,0.0002439971,0.00162306,0.0002895874,0.0007547709],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001426158,"about_ca_system_score_gemma":0.00003649045,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000859887,"about_ca_topic_score_gemma":0.0007630762,"domain_scores_codex":[0.9986095,0.0001493889,0.0002891581,0.0003107866,0.0002064229,0.0004346774],"domain_scores_gemma":[0.9979547,0.00002088941,0.0003631845,0.001568966,0.00002307842,0.0000692337],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00003657128,0.0001050389,0.01346534,0.00001176949,0.00002738842,0.000003387193,0.0007684921,0.0002598224,0.9845992,0.00004235199,0.0006145919,0.00006601373],"study_design_scores_gemma":[0.001310428,0.0003520121,0.6313623,0.00002885057,0.00006930628,0.0000286202,0.0001846221,0.00005099321,0.009029075,0.003036271,0.3539408,0.0006067925],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9716033,0.00004870334,0.00002255124,0.0003441461,0.0005197109,0.0003943979,0.0002221013,0.0000150097,0.02683004],"genre_scores_gemma":[0.9948004,0.0000509996,0.00009062346,0.0009126167,0.00004260672,0.00002068462,0.00007240715,0.0000133711,0.003996249],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9755701,"threshold_uncertainty_score":0.9949702,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02823166903895018,"score_gpt":0.2589382039142601,"score_spread":0.23070653487531,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}