{"id":"W2599214762","doi":"10.1128/jcm.00358-17","title":"Real-Time Sequencing of Mycobacterium tuberculosis: Are We There Yet?","year":2017,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":44,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"McGill University","keywords":"Minion; Mycobacterium tuberculosis; Nanopore sequencing; Chatterjee; DNA sequencing; Tuberculosis; Whole genome sequencing; Biology; Phylogenetic tree; Microbiology; Genetics; DNA; Computational biology; Genome; Medicine; Gene; Philosophy; Pathology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.02960034,0.0009562096,0.001402951,0.0008037994,0.001893268,0.005730641,0.003222428,0.01223203,0.008927478],"category_scores_gemma":[0.07734241,0.0007593511,0.001401868,0.001041954,0.007035937,0.01281177,0.002607228,0.02087746,0.006432569],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001819831,"about_ca_system_score_gemma":0.004384932,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002669914,"about_ca_topic_score_gemma":0.00336382,"domain_scores_codex":[0.9881782,0.004441609,0.001414834,0.001799421,0.003346387,0.0008196613],"domain_scores_gemma":[0.9002076,0.05948261,0.005970935,0.0075487,0.02069435,0.006095774],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0007787852,0.0001232546,0.005232088,0.002422921,0.0002470364,0.001140823,0.001186469,0.0008169432,0.0114444,0.02495992,0.7686859,0.1829614],"study_design_scores_gemma":[0.00006640011,0.0003073098,0.003156512,0.001522847,0.0001261885,0.001002031,0.001623033,0.001382264,0.006101204,0.05852403,0.9259637,0.0002243198],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"commentary","genre_gemma":"commentary","genre_scores_codex":[0.002469527,0.04354069,0.008506515,0.8504736,0.09220725,0.0000364203,0.0003730563,0.0003206526,0.002072277],"genre_scores_gemma":[0.04194276,0.06133602,0.02034257,0.7345995,0.1308843,0.0001900713,0.0007819363,0.0004472265,0.009475612],"genre_candidate":"commentary","genre_consensus":"commentary","teacher_disagreement_score":0.02960034,"threshold_uncertainty_score":0.1565434,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1020565461955048,"score_gpt":0.4270801648227152,"score_spread":0.3250236186272105,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}