{"id":"W2599594638","doi":"10.1534/g3.117.039305","title":"How Changes in Anti-SD Sequences Would Affect SD Sequences in <i>Escherichia coli</i> and <i>Bacillus subtilis</i>","year":2017,"lang":"en","type":"article","venue":"G3 Genes Genomes Genetics","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Ottawa","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Bacillus subtilis; Escherichia coli; Biology; Ribosomal RNA; Gene; Coding region; Genetics; 16S ribosomal RNA; Translation (biology); Molecular biology; Bacteria; Messenger RNA","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0005269891,0.0004298658,0.0004662907,0.000125488,0.0002706856,0.0003447158,0.0007794081,0.0005562581,0.0000114957],"category_scores_gemma":[0.00003568788,0.0004115185,0.0000866781,0.0001266019,0.0003677923,0.00001890526,0.000373956,0.0002122623,0.000004918571],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002888066,"about_ca_system_score_gemma":0.0001401903,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001352492,"about_ca_topic_score_gemma":0.0030234,"domain_scores_codex":[0.9977682,0.0001891466,0.0002910263,0.0008261043,0.0002559699,0.0006696027],"domain_scores_gemma":[0.9985639,0.00002796196,0.0002612578,0.0009168847,0.00006762436,0.0001623991],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003543273,0.00002911707,0.03938402,0.0000664587,0.00002817468,0.00003133591,0.0001429026,0.00005659413,0.7928979,0.00002206958,0.00002630223,0.1672796],"study_design_scores_gemma":[0.0006479384,0.0004015751,0.008841653,0.00005262859,0.00002527356,0.00002279391,0.0003457223,0.00007271823,0.898002,0.0003305977,0.09065168,0.0006054362],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7832609,0.2143382,0.000101866,0.001068881,0.0003405344,0.0005121963,0.00004865476,0.00001349422,0.0003152341],"genre_scores_gemma":[0.8291066,0.1675706,0.001962651,0.0003468605,0.000264519,0.0001028445,0.00002820371,0.0000442419,0.0005734821],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1666742,"threshold_uncertainty_score":0.9998336,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0236296267961741,"score_gpt":0.2549859374939342,"score_spread":0.2313563106977601,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}