{"id":"W2599827106","doi":"10.1128/mbio.00128-17","title":"RNA Sequencing Identifies New RNase III Cleavage Sites in <i>Escherichia coli</i> and Reveals Increased Regulation of mRNA","year":2017,"lang":"en","type":"article","venue":"mBio","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":67,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Institute of General Medical Sciences; Andlinger Center for Energy and the Environment, Princeton University; National Institutes of Health; Canadian Association for the Study of the Liver; U.S. Department of Energy","keywords":"RNase P; Endoribonuclease; RNA; Biology; Degradosome; RNase MRP; RNase H; Ribonuclease III; Exosome complex; RNase PH; Biochemistry; Post-transcriptional modification; Messenger RNA; Non-coding RNA; Molecular biology; Cell biology; Gene; RNA interference","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001458284,0.0003228585,0.0002305582,0.0003040887,0.0001114721,0.0004434693,0.0001337207,0.0003387107,0.0004879906],"category_scores_gemma":[0.0002541283,0.0001586821,0.0003534661,0.0002146676,0.0002040105,0.0001027789,0.0001181798,0.0003548204,0.0002853808],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002861679,"about_ca_system_score_gemma":0.0001505688,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008992403,"about_ca_topic_score_gemma":0.001177768,"domain_scores_codex":[0.9998069,0.00001932207,0.00001527446,0.00005659337,0.0000562505,0.00004570177],"domain_scores_gemma":[0.9996477,0.00006664055,0.0001270067,0.00003029748,0.00006135295,0.00006687867],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005434451,0.000005549137,0.000876,0.000009503731,0.000003777541,0.00002691503,0.000006124717,0.0000430644,0.9985359,0.00001451082,0.00001352898,0.0004107929],"study_design_scores_gemma":[0.000005227023,0.000173776,0.04891533,0.000005905182,0.00002195523,0.0003344745,0.00004579688,0.001421807,0.9481728,0.00005460726,0.0008383101,0.00001008882],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9945234,0.0002421863,0.003839261,0.00004403202,0.00001113982,0.00001183873,0.000802152,0.00008490366,0.0004411733],"genre_scores_gemma":[0.9919426,0.0001189737,0.005551231,0.00009322872,0.000006456819,0.00001843068,0.001503901,0.00005131711,0.0007139088],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0008992403,"threshold_uncertainty_score":0.002076268,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01446539268117652,"score_gpt":0.2407708479153849,"score_spread":0.2263054552342084,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}