{"id":"W2599994550","doi":"10.1371/journal.pcbi.1005453","title":"Effects of contact structure on the transient evolution of HIV virulence","year":2017,"lang":"en","type":"article","venue":"PLoS Computational Biology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":9,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Virulence; Biology; Population; Transmission (telecommunications); Epidemic model; Demography; Genetics; Computer science; Telecommunications","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001249839,0.0004495314,0.0005137816,0.0005145753,0.000662568,0.00152955,0.0006889733,0.001129131,0.002395796],"category_scores_gemma":[0.01077089,0.0003511395,0.0008035429,0.0003190046,0.00108197,0.002031219,0.00112408,0.001061271,0.0001713677],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001300824,"about_ca_system_score_gemma":0.0005920206,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00798279,"about_ca_topic_score_gemma":0.003586544,"domain_scores_codex":[0.9995053,0.0002260681,0.00001999408,0.00007065343,0.00004335683,0.0001345456],"domain_scores_gemma":[0.9947819,0.003556571,0.0007727662,0.0003420813,0.0002240399,0.0003226993],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.0003691407,0.0001990971,0.03748728,0.00007042866,0.0001014421,0.0004719963,0.0005468175,0.9162481,0.005998131,0.03098533,0.0006690681,0.006853091],"study_design_scores_gemma":[0.00004082458,0.0002540392,0.01209784,0.00002120282,0.00004845603,0.0001280338,0.0002457915,0.9724802,0.001211996,0.01306274,0.0003671158,0.0000417455],"study_design_candidate":"simulation_or_modeling","study_design_consensus":"simulation_or_modeling","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9897615,0.0001308877,0.007009776,0.0003428072,0.000008702364,0.00002147842,0.0001440127,0.00004618255,0.002534692],"genre_scores_gemma":[0.9991419,0.00005006982,0.0003589758,0.00001655297,0.00000283723,0.000009235066,0.00003745131,0.000005127437,0.0003777558],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00798279,"threshold_uncertainty_score":0.01587266,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01285492946808377,"score_gpt":0.2565350034104558,"score_spread":0.2436800739423721,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}