{"id":"W2600440564","doi":"10.1128/mbio.00186-17","title":"<i>Pseudomonas aeruginosa</i> Alginate Overproduction Promotes Coexistence with <i>Staphylococcus aureus</i> in a Model of Cystic Fibrosis Respiratory Infection","year":2017,"lang":"en","type":"article","venue":"mBio","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":176,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"National Institute of General Medical Sciences; National Institute of Allergy and Infectious Diseases; Natural Sciences and Engineering Research Council of Canada; Government of Canada; Canadian HIV Trials Network, Canadian Institutes of Health Research; Cystic Fibrosis Foundation","keywords":"Pseudomonas aeruginosa; Staphylococcus aureus; Microbiology; Coinfection; Regulon; Cystic fibrosis; Biology; Bacteria; Immunology; Bacterial protein; Genetics; Human immunodeficiency virus (HIV)","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004252118,0.0002197976,0.0004189411,0.0002192853,0.0001916507,0.00005807863,0.0001990399,0.00009744089,0.00001365547],"category_scores_gemma":[0.0007884554,0.0001826128,0.0000732504,0.0002278646,0.0005025216,0.0004481427,0.0001051198,0.0003130333,0.0000115631],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001644106,"about_ca_system_score_gemma":0.0002321084,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007165993,"about_ca_topic_score_gemma":0.0002992425,"domain_scores_codex":[0.9981266,0.00005711273,0.0003485005,0.0005108138,0.0005621006,0.0003948539],"domain_scores_gemma":[0.9982438,0.00007061504,0.0002979104,0.001000197,0.0002484968,0.0001389508],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001298519,0.0003050378,0.08400259,0.0006823235,0.00003389428,0.00003013828,0.0002189138,0.00117361,0.9092665,0.0001307297,0.0003319842,0.002525804],"study_design_scores_gemma":[0.004402174,0.002593116,0.24756,0.00183874,0.0001042897,0.00003209121,0.00004751452,0.01102726,0.7292548,0.001036045,0.001652745,0.0004512351],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9946205,0.0003209284,0.001732432,0.0004632662,0.00009143235,0.0009270295,0.00003651641,0.0000659575,0.001741931],"genre_scores_gemma":[0.9939263,0.0000336441,0.005506901,0.00006129749,0.00008386398,0.00009935764,0.00001077508,0.00003149404,0.0002463674],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1800116,"threshold_uncertainty_score":0.7446732,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02603710658965652,"score_gpt":0.3009697960118385,"score_spread":0.274932689422182,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}