{"id":"W2600844383","doi":"10.1101/gr.213363.116","title":"Phenotypic diversity and genotypic flexibility of <i>Burkholderia cenocepacia</i> during long-term chronic infection of cystic fibrosis lungs","year":2017,"lang":"en","type":"article","venue":"Genome Research","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":51,"is_retracted":false,"has_abstract":true,"ca_institutions":"BC Children's Hospital; University of British Columbia","funders":"National Institutes of Health; National Institute on Deafness and Other Communication Disorders; Genome British Columbia; Cystic Fibrosis Canada; National Aeronautics and Space Administration","keywords":"Biology; Burkholderia cenocepacia; Virulence; Burkholderia cepacia complex; Phenotype; Genome; Genotype; Cystic fibrosis; Chronic infection; Genetics; Phenotypic trait; Gene; Immune system; Burkholderia; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002060009,0.0001643012,0.0002600855,0.0005371525,0.0002257739,0.0005136125,0.0001278475,0.0002196673,0.0003569084],"category_scores_gemma":[0.0006296935,0.0001266443,0.0001648905,0.0004314013,0.0002328415,0.0002446845,0.0003175557,0.0002240993,0.0001261908],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001642191,"about_ca_system_score_gemma":0.0001046533,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001794373,"about_ca_topic_score_gemma":0.001964349,"domain_scores_codex":[0.9997665,0.0000355139,0.00001872533,0.00007134835,0.00003609791,0.00007174915],"domain_scores_gemma":[0.9996721,0.00006430013,0.0001239967,0.00002787013,0.00004479165,0.00006697668],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0004913234,0.00005744558,0.5329214,0.00004263976,0.00006886735,0.0003247566,0.0005008415,0.0003061761,0.4572826,0.00005637893,0.00008780289,0.007859702],"study_design_scores_gemma":[0.000003062802,0.0001312039,0.9928514,0.000003916704,0.00001575717,0.0005485011,0.0003081997,0.0003180164,0.005573642,0.00002643759,0.0002132101,0.00000671302],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9996099,0.00007041702,0.00007671154,0.000006303362,5.696272e-7,0.000002223442,0.0001525254,0.000001916361,0.00007932829],"genre_scores_gemma":[0.999471,0.00004278291,0.0001281045,0.00000943945,0.000001464642,0.000003674977,0.0002880735,0.000001494521,0.00005395027],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001794373,"threshold_uncertainty_score":0.003567934,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06379285458705918,"score_gpt":0.3729818367054171,"score_spread":0.3091889821183579,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}