{"id":"W2603968794","doi":"10.1101/107797","title":"Contextual diversity of the human cell-essential proteome","year":2017,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal; McGill University; Institute for Research in Immunology and Cancer","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Cancer Society Research Institute; Canadian Institutes of Health Research; National Institutes of Health; Génome Québec","keywords":"Biology; Gene; Genetics; RefSeq; Alternative splicing; Proteome; ENCODE; Exon; Computational biology; Context (archaeology); Function (biology); Genome","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001964561,0.0001295267,0.0002297239,0.0004854824,0.0001267851,0.0003487796,0.00009822194,0.000134769,0.0007857771],"category_scores_gemma":[0.0003762534,0.0001023989,0.0001354681,0.0004116587,0.0001806314,0.0001606316,0.0002795665,0.0001563105,0.0002526004],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000154243,"about_ca_system_score_gemma":0.0001375936,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003978909,"about_ca_topic_score_gemma":0.0004637075,"domain_scores_codex":[0.9998617,0.00001734274,0.00001053298,0.00005757843,0.00003380735,0.00001897421],"domain_scores_gemma":[0.9997662,0.00007865812,0.00005890834,0.00002908605,0.00003384267,0.00003337535],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002139166,0.000006750977,0.01390313,0.0000515484,0.00002630684,0.0001464451,0.00006721295,0.000267739,0.981205,0.0002330047,0.0001596112,0.003719335],"study_design_scores_gemma":[0.00002425599,0.0002178671,0.486719,0.00002240957,0.0001301846,0.002358715,0.0002702155,0.004067432,0.4965677,0.001651165,0.007936971,0.00003401727],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.99558,0.0006719776,0.001861613,0.00003926115,0.000004133192,0.000002839883,0.001277564,0.0000486856,0.0005138832],"genre_scores_gemma":[0.9956169,0.0002276969,0.001411142,0.00003361775,0.000004401345,0.000004087778,0.002442926,0.00002702108,0.0002321666],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0007857771,"threshold_uncertainty_score":0.002628684,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01435519083907779,"score_gpt":0.2213118663747058,"score_spread":0.206956675535628,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}