{"id":"W2604200516","doi":"10.1101/123455","title":"CiliaCarta: an integrated and validated compendium of ciliary genes","year":2017,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Genetic and Kidney Cyst Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"ca_institutions":"Simon Fraser University","funders":"","keywords":"Ciliopathy; Ciliopathies; Cilium; Biology; Candidate gene; Joubert syndrome; Gene; Computational biology; Phenotype; Compendium; Genetics; Zebrafish; Bioinformatics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002512079,0.001433012,0.001495227,0.003285392,0.0011959,0.001464878,0.001488678,0.0006070562,0.005943692],"category_scores_gemma":[0.00515003,0.0006673065,0.00236421,0.002721385,0.0004946339,0.0004054168,0.001306426,0.001139545,0.003641885],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007022608,"about_ca_system_score_gemma":0.002683431,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004010567,"about_ca_topic_score_gemma":0.009868587,"domain_scores_codex":[0.9979442,0.0002795178,0.0002112966,0.0007686923,0.0006729223,0.0001233473],"domain_scores_gemma":[0.9973218,0.001352168,0.0002671135,0.0004571058,0.0004516429,0.0001501094],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.002232824,0.0004089384,0.06448948,0.007553339,0.002394596,0.002975238,0.0009805863,0.03899887,0.509868,0.008080938,0.14823,0.2137871],"study_design_scores_gemma":[0.001338392,0.001157702,0.1701955,0.0008049503,0.002684406,0.004982785,0.0002949802,0.1726128,0.1233725,0.006360125,0.5156888,0.000506901],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"dataset","genre_gemma":"dataset","genre_scores_codex":[0.1428975,0.002104165,0.1086146,0.0002382793,0.0003474314,0.0006649425,0.7155371,0.02251479,0.007081142],"genre_scores_gemma":[0.05447925,0.0004018399,0.1423319,0.0001290424,0.00003483029,0.001019823,0.7982321,0.001883121,0.001488204],"genre_candidate":"dataset","genre_consensus":"dataset","teacher_disagreement_score":0.005943692,"threshold_uncertainty_score":0.01988363,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01380940953711913,"score_gpt":0.2364041295993305,"score_spread":0.2225947200622114,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}