{"id":"W2604210428","doi":"10.1101/124099","title":"Genome-wide association study and genomic predictions for resistance against <i>Piscirickettsia salmonis</i> in coho salmon ( <i>Oncorhynchus kisutch</i> ) using ddRAD sequencing","year":2017,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Genetic and phenotypic traits in livestock","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"ca_institutions":"Simon Fraser University","funders":"Fondo de Fomento al Desarrollo Científico y Tecnológico; Comisión Nacional de Investigación Científica y Tecnológica; Universidad de Chile; Government of Canada; Newton Fund","keywords":"Biology; Genotyping; Genetics; Single-nucleotide polymorphism; Genome; Population; Genome-wide association study; SNP; Oncorhynchus; Genotype; Gene; Fishery; Fish <Actinopterygii>","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005727701,0.0002771787,0.0002193559,0.000491326,0.0002691135,0.0002463599,0.0001847229,0.0002622251,0.001246756],"category_scores_gemma":[0.000583125,0.0001110478,0.000536224,0.0005743669,0.0001885172,0.0000721457,0.0001816343,0.0003220669,0.00009843487],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002426378,"about_ca_system_score_gemma":0.0002870119,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01150575,"about_ca_topic_score_gemma":0.01935232,"domain_scores_codex":[0.9997848,0.0000499406,0.00001575391,0.00009773103,0.00002679273,0.00002501861],"domain_scores_gemma":[0.999588,0.0001933436,0.00008588336,0.00003034821,0.00004197141,0.0000604484],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0007637134,0.00009307795,0.9279063,0.0000508166,0.000719848,0.0004000699,0.000164336,0.001983643,0.06046141,0.0001358413,0.0002347861,0.007086077],"study_design_scores_gemma":[0.00002978594,0.0001407574,0.9918663,0.000006923842,0.000208567,0.0001184322,0.0001093934,0.006133422,0.001040988,0.00005200311,0.0002864383,0.000006967965],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9988949,0.00004453198,0.00064865,0.00002014956,0.000002119997,0.000006241651,0.0002794004,0.000007711285,0.00009633119],"genre_scores_gemma":[0.9982053,0.00002547474,0.0009376585,0.0000160154,0.000002801872,0.00001105246,0.000666003,0.000004194196,0.0001313155],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01150575,"threshold_uncertainty_score":0.02287757,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01771456936328148,"score_gpt":0.2395428724547311,"score_spread":0.2218283030914496,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}