{"id":"W2604358300","doi":"10.1093/jhered/esx033","title":"DAMBE6: New Tools for Microbial Genomics, Phylogenetics, and Molecular Evolution","year":2017,"lang":"en","type":"article","venue":"Journal of Heredity","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":411,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Ottawa","funders":"","keywords":"Biology; Phylogenetic tree; Computational biology; Multiple sequence alignment; Alignment-free sequence analysis; Phylogenetics; Pairwise comparison; Genetics; Genomics; Sequence alignment; Evolutionary biology; Gene; Genome; Computer science; Peptide sequence; Artificial intelligence","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.004270156,0.004249263,0.004032273,0.004219601,0.001539026,0.003655511,0.005537551,0.002264376,0.04421354],"category_scores_gemma":[0.005803606,0.003485636,0.003266297,0.00370778,0.000966455,0.00556996,0.006176352,0.006408948,0.0410693],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001083837,"about_ca_system_score_gemma":0.00201526,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001811652,"about_ca_topic_score_gemma":0.001887149,"domain_scores_codex":[0.9978763,0.0005551933,0.0002258441,0.0004115434,0.0007128018,0.0002182942],"domain_scores_gemma":[0.9984134,0.0007284224,0.0001383978,0.0002628184,0.0002037334,0.0002530599],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.002255825,0.0003406891,0.003135406,0.005446802,0.0007220592,0.0009599581,0.001429743,0.007146134,0.06461874,0.02749807,0.5015911,0.3848554],"study_design_scores_gemma":[0.0007367599,0.0001428637,0.002115388,0.0007165371,0.0001642446,0.0009591705,0.000128336,0.0333855,0.02715247,0.03601877,0.8981157,0.0003642787],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"methods","genre_gemma":"software","genre_scores_codex":[0.00320362,0.002601772,0.6187615,0.0005133928,0.0005787847,0.0002824599,0.03081653,0.3373866,0.005855374],"genre_scores_gemma":[0.012635,0.003096445,0.8318101,0.0009130902,0.0001864946,0.001898789,0.08545597,0.05632363,0.007680409],"genre_candidate":"software","genre_consensus":null,"teacher_disagreement_score":0.04421354,"threshold_uncertainty_score":0.147909,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02084997283991802,"score_gpt":0.2623546987464235,"score_spread":0.2415047259065055,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}