{"id":"W2604407418","doi":"10.1093/gbe/evx062","title":"A Locus Encoding Variable Defense Systems against Invading DNA Identified in Streptococcus suis","year":2017,"lang":"en","type":"article","venue":"Genome Biology and Evolution","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":20,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal","funders":"Senri Life Science Foundation; Ichiro Kanehara Foundation for the Promotion of Medical Sciences and Medical Care; National Institutes of Health; Japan Society for the Promotion of Science; Ministry of Education, Culture, Sports, Science and Technology; Kurita Water and Environment Foundation","keywords":"Biology; Genetics; Genome; Locus (genetics); Gene; Mobile genetic elements; Streptococcus suis; Horizontal gene transfer; Evolutionary biology; Virulence","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002366057,0.0001234615,0.0002463874,0.0001261134,0.0004291073,0.00004869283,0.0000553055,0.0001832622,0.00002735485],"category_scores_gemma":[0.0001286021,0.0001064157,0.00003823214,0.00007646854,0.0001151694,0.0001133928,0.00006084286,0.0001221753,0.00003783137],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002012388,"about_ca_system_score_gemma":0.00004886542,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00101187,"about_ca_topic_score_gemma":0.00009873133,"domain_scores_codex":[0.9991352,0.00004960702,0.0002192842,0.000292998,0.00003902862,0.0002638702],"domain_scores_gemma":[0.9994112,0.00003551983,0.0001224168,0.0003000394,0.00004652226,0.00008428096],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00004821019,0.00006657081,0.9470922,0.0000376583,0.00006938514,0.00002125481,0.00004886617,0.00002029412,0.04942389,0.002699018,0.00002180458,0.0004508065],"study_design_scores_gemma":[0.00172736,0.0001746021,0.9952469,0.0001234448,0.00006240985,0.0000424302,0.0001201493,0.0004236539,0.0002205927,0.000973888,0.0007528941,0.000131621],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9922805,0.001173254,0.0004743182,0.00004668432,0.0004247493,0.0005226016,0.00001593145,0.00003513612,0.005026781],"genre_scores_gemma":[0.999163,0.0001345155,0.00005247826,0.00001491944,0.0001334404,0.00009934657,0.00005139585,0.000007731469,0.0003432219],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0492033,"threshold_uncertainty_score":0.4339506,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02770418412219732,"score_gpt":0.2955640496059967,"score_spread":0.2678598654837994,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}