{"id":"W2604407418","doi":"10.1093/gbe/evx062","title":"A Locus Encoding Variable Defense Systems against Invading DNA Identified in Streptococcus suis","year":2017,"lang":"en","type":"article","venue":"Genome Biology and Evolution","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":20,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal","funders":"Senri Life Science Foundation; Ichiro Kanehara Foundation for the Promotion of Medical Sciences and Medical Care; National Institutes of Health; Japan Society for the Promotion of Science; Ministry of Education, Culture, Sports, Science and Technology; Kurita Water and Environment Foundation","keywords":"Biology; Genetics; Genome; Locus (genetics); Gene; Mobile genetic elements; Streptococcus suis; Horizontal gene transfer; Evolutionary biology; Virulence","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009579142,0.0003782697,0.0002434981,0.0008252851,0.0002096055,0.0002349836,0.0001483761,0.0003060458,0.0005807282],"category_scores_gemma":[0.0003561592,0.000132188,0.0003353051,0.0006493655,0.0002856072,0.0001618677,0.0003632549,0.0003792459,0.000167296],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001769742,"about_ca_system_score_gemma":0.0002277163,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001014223,"about_ca_topic_score_gemma":0.001035972,"domain_scores_codex":[0.9998918,0.00001179828,0.000008798227,0.00003013912,0.00003224372,0.00002512494],"domain_scores_gemma":[0.9996576,0.00006374579,0.0001306787,0.00003344635,0.00003239503,0.00008209465],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001620149,0.00003353861,0.01278233,0.00009521261,0.00001967026,0.0002495599,0.0001053897,0.00009141534,0.9814641,0.0001122198,0.00002572456,0.004858784],"study_design_scores_gemma":[0.00003397075,0.0008794926,0.6053656,0.00004638162,0.0001500933,0.003091657,0.0004581023,0.001537374,0.3850485,0.000576229,0.002777529,0.00003505485],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9981496,0.0003292918,0.00096035,0.0000158444,0.000007547541,0.000009800508,0.0001975203,0.00002419854,0.0003059162],"genre_scores_gemma":[0.9975164,0.0001153662,0.001290523,0.00001501822,0.00000521417,0.00001021665,0.0006787258,0.000006318599,0.0003621764],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001014223,"threshold_uncertainty_score":0.002016664,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02770418412219732,"score_gpt":0.2955640496059967,"score_spread":0.2678598654837994,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}