{"id":"W2604804146","doi":"10.1038/s41598-017-00850-0","title":"Genetic variants of PTPN2 are associated with lung cancer risk: a re-analysis of eight GWASs in the TRICL-ILCCO consortium","year":2017,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Protein Tyrosine Phosphatases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":15,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Ontario; Lunenfeld-Tanenbaum Research Institute; Mount Sinai Hospital","funders":"FP7 Research Potential of Convergence Regions; Duke Cancer Institute; National Cancer Institute; National Institute on Drug Abuse; Deutsche Krebshilfe; University of Colorado Denver; Deutsche Forschungsgemeinschaft; Canadian Cancer Society Research Institute; National Institutes of Health; Institut National Du Cancer; Tartu Ülikool; Norges Forskningsråd; Georgetown University; World Health Organization; Wellcome Trust; Cancer Research UK; National Human Genome Research Institute; Bundesamt für Strahlenschutz; Henry Ford Health System; European Regional Development Fund; Sanofi; Roy Castle Lung Cancer Foundation; University of Minnesota; Cancer Care Ontario; University of Pittsburgh; Deutscher Akademischer Austauschdienst","keywords":"Single-nucleotide polymorphism; Genome-wide association study; Lung cancer; Genetic association; Genetics; In silico; Biology; Medicine; Gene; Bioinformatics; Oncology; Genotype","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.007012576,0.00116766,0.001881332,0.001911071,0.001043471,0.002333216,0.001205113,0.0009608796,0.001815478],"category_scores_gemma":[0.0143734,0.0004735245,0.002938734,0.004299404,0.0005797521,0.0004779402,0.00166429,0.001320521,0.0003307734],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007462039,"about_ca_system_score_gemma":0.0009570062,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01901233,"about_ca_topic_score_gemma":0.03190548,"domain_scores_codex":[0.9922392,0.002028175,0.0009240164,0.003212456,0.001153229,0.0004428366],"domain_scores_gemma":[0.9894531,0.003544839,0.001629361,0.003141952,0.001435825,0.0007949173],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"meta_analysis","study_design_scores_codex":[0.002229712,0.00002743999,0.9621661,0.0003326355,0.01036287,0.002129747,0.000371305,0.0004986707,0.007190154,0.0001870517,0.00289982,0.01160449],"study_design_scores_gemma":[0.0003357728,0.0001000736,0.9833432,0.00009042261,0.007507749,0.002128693,0.0001841812,0.001110017,0.000799259,0.0002166655,0.004144509,0.00003942733],"study_design_candidate":"meta_analysis","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9737735,0.01072563,0.004815659,0.0008774602,0.0001683663,0.00007699847,0.008063524,0.0001603635,0.001338534],"genre_scores_gemma":[0.9886962,0.001061436,0.00179117,0.0004153271,0.000101842,0.00007290319,0.007272082,0.0001299333,0.0004591217],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01901233,"threshold_uncertainty_score":0.03780335,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01202591043936331,"score_gpt":0.2723401279031402,"score_spread":0.2603142174637769,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}