{"id":"W2604987899","doi":"10.1155/2017/4979252","title":"A Robust PCR Protocol for HIV Drug Resistance Testing on Low-Level Viremia Samples","year":2017,"lang":"en","type":"article","venue":"BioMed Research International","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":15,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba; Public Health Agency of Canada","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health; Manitoba Medical Service Foundation","keywords":"Viremia; HIV drug resistance; Genotyping; Viral load; Virology; Drug resistance; Human immunodeficiency virus (HIV); Protocol (science); Medicine; Biology; Genotype; Antiretroviral therapy; Gene; Genetics; Pathology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["sts","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.001329138,0.0001614552,0.0001670811,0.0003460114,0.001419846,0.0002327166,0.001158797,0.0001249079,0.0005370601],"category_scores_gemma":[0.003980456,0.0001265042,0.00008693318,0.00009508161,0.0006781252,0.0001463148,0.0003183567,0.0004135949,0.001610755],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003076384,"about_ca_system_score_gemma":0.0002856831,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001268127,"about_ca_topic_score_gemma":0.0002295194,"domain_scores_codex":[0.9979991,0.0002121953,0.0002538458,0.0004908039,0.0003187815,0.0007252253],"domain_scores_gemma":[0.9973716,0.001093448,0.0001281487,0.000568061,0.0007556798,0.00008311083],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.004976564,0.001262295,0.005870803,0.0001831656,0.0005774266,0.00007666714,0.000209111,0.000004218324,0.1557254,0.006070949,0.7973501,0.02769324],"study_design_scores_gemma":[0.007662542,0.0002404449,0.02611355,0.00040724,0.000003491495,0.00001028298,0.00007516664,0.00004867533,0.0573988,0.001609818,0.9062096,0.0002203365],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"protocol","genre_gemma":"protocol","genre_scores_codex":[0.1034628,0.0002656518,0.004401207,0.1246972,0.00573211,0.5221555,0.01922478,0.0007078863,0.2193528],"genre_scores_gemma":[0.286144,0.000007594614,0.009454322,0.00008464165,0.0008412503,0.4620301,0.001266817,0.0000744302,0.2400969],"genre_candidate":"protocol","genre_consensus":"protocol","teacher_disagreement_score":0.1826812,"threshold_uncertainty_score":0.9998802,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.345764083825304,"score_gpt":0.4444476344066151,"score_spread":0.09868355058131106,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}