{"id":"W2605111369","doi":"10.1016/j.ympev.2017.04.001","title":"Genome-wide SNPs resolve phylogenetic relationships in the North American spruce budworm (Choristoneura fumiferana) species complex","year":2017,"lang":"en","type":"article","venue":"Molecular Phylogenetics and Evolution","topic":"Forest Ecology and Biodiversity Studies","field":"Agricultural and Biological Sciences","cited_by":42,"is_retracted":false,"has_abstract":false,"ca_institutions":"Université Laval; Canadian Forest Service; Natural Resources Canada; University of Alberta","funders":"Alberta Innovates Bio Solutions","keywords":"Biology; Spruce budworm; Choristoneura fumiferana; Phylogenetic tree; Clade; Evolutionary biology; Phylogenomics; Introgression; Phylogenetics; Ecology; Genetics; Lepidoptera genitalia; Tortricidae; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.0002710189,0.000147695,0.0001669834,0.00002232414,0.001556122,0.00009604289,0.0003906639,0.00005859435,0.00000915751],"category_scores_gemma":[0.0001319013,0.00006775973,0.00006110641,0.0001748686,0.0006237166,0.00003178136,0.0001700875,0.0001783498,0.00001387113],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000345728,"about_ca_system_score_gemma":0.000005478588,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004388232,"about_ca_topic_score_gemma":0.01766834,"domain_scores_codex":[0.9989253,0.0001902536,0.0001558151,0.0002880934,0.000163313,0.0002771819],"domain_scores_gemma":[0.9994698,0.0001195885,0.0001424302,0.0001629607,0.00005492577,0.0000503323],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00002359928,0.00004114155,0.9852001,0.000002928225,0.00001529765,0.00001429314,0.000116868,0.0000437029,0.01364388,0.0002157981,0.00009600352,0.0005863874],"study_design_scores_gemma":[0.0001154449,0.0002069771,0.9956867,0.000002468884,0.00002497395,0.000004519676,0.0003668683,0.00006008776,0.00007088327,0.0004547178,0.002853674,0.0001527024],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.995451,0.0004499221,0.00002623486,0.003143892,0.00004679185,0.0002203242,0.00004511348,0.00001064135,0.0006060494],"genre_scores_gemma":[0.9991808,0.0002891795,0.0001235077,0.0002322058,0.00007415297,0.00001004155,0.00005410833,0.000001041371,0.00003497381],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01722952,"threshold_uncertainty_score":0.9997437,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03434340950425772,"score_gpt":0.2138788880996859,"score_spread":0.1795354785954281,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}