{"id":"W2605460970","doi":"10.1038/srep46203","title":"Genetic architecture of gene expression underlying variation in host response to porcine reproductive and respiratory syndrome virus infection","year":2017,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Animal Virus Infections Studies","field":"Agricultural and Biological Sciences","cited_by":36,"is_retracted":false,"has_abstract":true,"ca_institutions":"Ontario Power Generation; University of Alberta","funders":"Alberta Livestock and Meat Agency; Western Canada Research Grid; Compute Canada; Agricultural Research Service; Genome Canada; Genome Alberta; U.S. Department of Agriculture","keywords":"Expression quantitative trait loci; Biology; Porcine reproductive and respiratory syndrome virus; Viremia; Genetic architecture; Gene; Genetic variation; Genotype; Gene expression; Quantitative trait locus; Genetics; Virus; Phenotype; Virology; Immunology; Single-nucleotide polymorphism","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001657395,0.0001086958,0.000171404,0.0000887322,0.0008841227,0.0001395603,0.00008824095,0.0000631459,0.0000229028],"category_scores_gemma":[0.001244022,0.00005265553,0.00003652788,0.0003029525,0.0001962979,0.0001684278,0.0001595549,0.00008989353,0.000003211158],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004777607,"about_ca_system_score_gemma":0.00001787636,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001091112,"about_ca_topic_score_gemma":0.00165696,"domain_scores_codex":[0.9984393,0.0001296745,0.0003408008,0.0006833323,0.0002363165,0.000170537],"domain_scores_gemma":[0.9990507,0.00006523199,0.0003790342,0.0003183103,0.0001270665,0.00005968449],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00007964604,0.00003529268,0.1134575,0.000004615445,0.000003716276,0.00004760209,0.0003169456,0.00006313714,0.8843052,0.000001738244,0.00004268135,0.001641932],"study_design_scores_gemma":[0.00004667963,0.0002089308,0.9177889,0.00004713141,0.000005799501,0.0001004399,0.00003880808,0.000002248287,0.07996332,0.000756222,0.0009454523,0.00009609912],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.998318,0.0001028538,0.00006580957,0.0002101998,0.0008212184,0.0003491461,0.000004373625,0.00002604139,0.0001023198],"genre_scores_gemma":[0.9993654,0.000005824009,0.0003854048,0.00001365595,0.00004772113,0.00002485841,0.000001702467,0.000001297058,0.0001540825],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8043419,"threshold_uncertainty_score":0.6800047,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0431839050834154,"score_gpt":0.2781415843004569,"score_spread":0.2349576792170415,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}