{"id":"W2605721875","doi":"10.1111/tpj.13582","title":"Sequencing and functional validation of the <scp>JGI </scp><i>Brachypodium distachyon</i> T‐<scp>DNA</scp> collection","year":2017,"lang":"en","type":"article","venue":"The Plant Journal","topic":"Plant Disease Resistance and Genetics","field":"Agricultural and Biological Sciences","cited_by":43,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"U.S. Department of Energy; Biological and Environmental Research; Office of Science; National Science Foundation","keywords":"Brachypodium distachyon; Biology; Brachypodium; Functional genomics; Gene; genomic DNA; Genome; Genetics; Genomics; Genomic library; Computational biology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.0004621888,0.0001162429,0.0001305218,0.00001067381,0.001884233,0.0002775241,0.0003194207,0.00006527408,0.00001056178],"category_scores_gemma":[0.000309842,0.00003648352,0.00009504179,0.00008325226,0.0001327066,0.0001558853,0.00008135352,0.0002139298,0.000004768077],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000340869,"about_ca_system_score_gemma":0.00004558181,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004499266,"about_ca_topic_score_gemma":0.0002183413,"domain_scores_codex":[0.9989689,0.000119299,0.0002100108,0.0001332322,0.0003455169,0.0002230121],"domain_scores_gemma":[0.9988555,0.000478653,0.0004024272,0.00009415536,0.0000758433,0.00009347473],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00003383152,0.00007774465,0.09950367,0.00002381953,0.0001083537,0.00001802916,0.000511289,0.0001631337,0.8697886,0.0002547321,0.02748208,0.002034668],"study_design_scores_gemma":[0.0002431778,0.00008912981,0.9244184,0.0000792256,0.00009597688,0.0005430164,0.001078908,0.0002452543,0.05544954,0.002841516,0.01487633,0.00003955265],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.997003,0.0003503935,0.00001571125,0.0005907435,0.0003481827,0.0001131121,0.0002651605,0.00001018565,0.001303564],"genre_scores_gemma":[0.9978189,0.0004779304,0.00001269667,0.000104893,0.0004771824,0.000003139609,0.00003721681,0.000001133715,0.001066937],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8249147,"threshold_uncertainty_score":0.9994152,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03258263232791316,"score_gpt":0.2058644311343656,"score_spread":0.1732817988064524,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}