{"id":"W2606019449","doi":"10.1002/jcb.26053","title":"Comprehensive Dissection of Transcriptome Data and Regulatory Factors in Pancreatic Cancer Cells","year":2017,"lang":"en","type":"article","venue":"Journal of Cellular Biochemistry","topic":"Pancreatic and Hepatic Oncology Research","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta; Douglas Mental Health University Institute; McGill University; McGill Genome Centre","funders":"","keywords":"Pancreatic cancer; Transcriptome; Biology; Transcription factor; Gene; FOXM1; Regulation of gene expression; Gene regulatory network; Regulator; Cancer research; Transcriptional regulation; Gene expression; Downregulation and upregulation; Gene expression profiling; Cancer; Computational biology; Bioinformatics; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002729335,0.00009914457,0.0005171094,0.00006840645,0.00005699131,0.00001280396,0.0002511841,0.0001274005,0.00006090516],"category_scores_gemma":[0.0001131734,0.00007711796,0.00005764937,0.00003656563,0.0002696216,0.00008897526,0.00006010229,0.00027281,2.912674e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005993764,"about_ca_system_score_gemma":0.0002593538,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00008677458,"about_ca_topic_score_gemma":0.000004516097,"domain_scores_codex":[0.9990508,0.00002958306,0.000386205,0.0001383,0.0002597728,0.0001353418],"domain_scores_gemma":[0.9987411,0.00006580405,0.0003887309,0.0005196696,0.0001527516,0.0001318987],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001735958,0.00007643554,0.2791554,0.0003977406,0.000101061,0.00006679174,0.00013177,3.984065e-7,0.7196251,7.568885e-7,0.0001220017,0.0001489008],"study_design_scores_gemma":[0.001333461,0.0001192451,0.2667964,0.0004139457,0.0002163204,0.00006976032,0.0004547509,0.0001402148,0.7302776,0.00001826036,0.000101288,0.00005875847],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9960835,0.003202397,0.00005944357,0.0001742425,0.00009652986,0.00008855042,0.00002371361,0.000001724302,0.0002698759],"genre_scores_gemma":[0.9983399,0.0009527646,0.0002184331,0.000009697231,0.000115255,8.951028e-7,0.00001047944,0.00000887993,0.000343689],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01235904,"threshold_uncertainty_score":0.3144779,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05274469958700862,"score_gpt":0.3556210901107788,"score_spread":0.3028763905237702,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}