{"id":"W2608187006","doi":"10.1016/j.idm.2017.04.002","title":"In-host modeling","year":2017,"lang":"en","type":"article","venue":"Infectious Disease Modelling","topic":"Mathematical and Theoretical Epidemiology and Ecology Models","field":"Medicine","cited_by":72,"is_retracted":false,"has_abstract":true,"ca_institutions":"York University","funders":"Natural Sciences and Engineering Research Council of Canada; Simons Foundation","keywords":"Host (biology); Computer science; Mathematical model; Data science; Risk analysis (engineering); Biology; Medicine; Mathematics; Ecology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003647499,0.0001273081,0.0003232289,0.00006650415,0.0003248632,0.00002342208,0.00009711894,0.0001181196,0.0002365638],"category_scores_gemma":[0.00042769,0.0001046827,0.0001224594,0.00002432811,0.0001592204,0.0001467935,0.00005828413,0.000264922,0.0001413878],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003044306,"about_ca_system_score_gemma":0.00004680468,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000704869,"about_ca_topic_score_gemma":0.00000655713,"domain_scores_codex":[0.9990476,0.00003232534,0.0002709101,0.0002632428,0.00007909763,0.0003067686],"domain_scores_gemma":[0.999061,0.00009557564,0.00005676926,0.0004565844,0.0000422984,0.0002877899],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.0003005964,0.000426295,0.02265913,0.0001629974,0.00004549962,0.0002444746,0.00007548715,0.3444494,0.00002190398,0.6314613,0.00002289266,0.0001300783],"study_design_scores_gemma":[0.0004601399,0.00002321656,0.0004688574,0.00006964009,0.00004313549,0.000009857765,0.000002385764,0.6915509,0.000005106087,0.3072663,0.00002263136,0.00007782866],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.5514489,0.00007435303,0.4268289,0.001609808,0.0001168981,0.0001439502,0.000001245749,0.0000438665,0.01973209],"genre_scores_gemma":[0.9981198,0.00007049672,0.0003982573,0.001012261,0.0001282973,0.00003242462,0.000002100714,0.0000143859,0.0002220131],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4466709,"threshold_uncertainty_score":0.4268838,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0478276603181736,"score_gpt":0.3201303202396456,"score_spread":0.272302659921472,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}