{"id":"W2608301083","doi":"10.3389/fcimb.2017.00134","title":"The NAG Sensor NagC Regulates LEE Gene Expression and Contributes to Gut Colonization by Escherichia coli O157:H7","year":2017,"lang":"en","type":"article","venue":"Frontiers in Cellular and Infection Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":28,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Veterinary Medical Association","funders":"Fonds de Recherche du Québec - Santé; Natural Sciences and Engineering Research Council of Canada; Institut pour la Recherche en Santé Publique; Université de Montréal; European Commission","keywords":"Biology; Escherichia coli; Bacteroides thetaiotaomicron; Microbiology; Enterocyte; Secretion; Repressor; Operon; Gene expression; Bacteria; Bacteroides; Gene; Small intestine; Biochemistry","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003637357,0.0001685634,0.0002112204,0.00005278764,0.0008436874,0.0001172331,0.0001478303,0.0002392575,0.000001856219],"category_scores_gemma":[0.0003943664,0.0001346528,0.00003399901,0.00006258232,0.0004534309,0.00001147679,0.0003351016,0.0001379868,0.000001558628],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003164708,"about_ca_system_score_gemma":0.00002943903,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006969146,"about_ca_topic_score_gemma":0.00007484719,"domain_scores_codex":[0.9988776,0.000185763,0.0001955567,0.0003910404,0.00003604728,0.0003139614],"domain_scores_gemma":[0.9993707,0.00002907033,0.0001147391,0.0003147676,0.0001068309,0.00006391954],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001341599,0.00002550522,0.07128344,0.00001223468,0.0000553928,9.789687e-7,0.00003176735,0.000006795354,0.9013195,0.00001393189,0.02651751,0.0005987999],"study_design_scores_gemma":[0.0009300506,0.0002411574,0.01181889,0.00001704351,0.00001370235,0.000005531072,0.00007714558,0.0001149311,0.7907979,0.0000885168,0.1957147,0.000180409],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9823956,0.007314217,0.008418762,0.0006987664,0.0005955393,0.0004218379,0.00002794826,0.0000107633,0.0001164973],"genre_scores_gemma":[0.9909158,0.005835818,0.001524264,0.000191727,0.00009557567,0.00006458684,0.0001124669,0.00001867146,0.001241088],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1691971,"threshold_uncertainty_score":0.6489046,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005223204410206145,"score_gpt":0.2317347755411147,"score_spread":0.2265115711309085,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}