{"id":"W2608487937","doi":"10.1016/j.mimet.2017.04.012","title":"Subtyping of Canadian isolates of Salmonella Enteritidis using Multiple Locus Variable Number Tandem Repeat Analysis (MLVA) alone and in combination with Pulsed-Field Gel Electrophoresis (PFGE) and phage typing","year":2017,"lang":"en","type":"article","venue":"Journal of Microbiological Methods","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":17,"is_retracted":false,"has_abstract":false,"ca_institutions":"Alberta Ministry of Agriculture and Forestry; University of Guelph; University of Alberta; Provincial Laboratory of Public Health","funders":"Alberta Agriculture and Forestry; Public Health Agency of Canada; Alberta Health Services","keywords":"Multiple Loci VNTR Analysis; Subtyping; Pulsed-field gel electrophoresis; Biology; Typing; Variable number tandem repeat; Salmonella enterica; DNA profiling; Serotype; Microbiology; Genetics; Salmonella enteritidis; Salmonella; Virology; Genotype; Bacteria; Gene; Computer science","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001846585,0.0001472163,0.0007512359,0.0001435777,0.0001547122,0.00003574352,0.0002131608,0.0002151992,0.00005393384],"category_scores_gemma":[0.0007106379,0.00006371425,0.0001078968,0.0004534302,0.0001645523,0.0001119785,0.00006877058,0.0002172269,8.706881e-8],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003768725,"about_ca_system_score_gemma":0.00002076175,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.02107898,"about_ca_topic_score_gemma":0.009820463,"domain_scores_codex":[0.9982959,0.0006010634,0.0005786829,0.0002056335,0.00004518081,0.0002735596],"domain_scores_gemma":[0.9978421,0.001048836,0.000757171,0.00008126501,0.0001538155,0.0001167801],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001532728,0.00003312329,0.4361126,0.000006515255,0.0000872508,0.000005193983,0.00002646018,0.00001370026,0.5567183,0.00001175371,0.000003007189,0.006828759],"study_design_scores_gemma":[0.0007834654,0.000842236,0.924134,0.0001623127,0.0003001778,0.0003674826,0.0002542976,0.000789109,0.07110447,0.0008758177,0.0001540416,0.0002326256],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9974844,0.0009037364,0.001171018,0.0002362418,0.0000381056,0.00008656681,0.00001279091,0.000002552523,0.00006462941],"genre_scores_gemma":[0.9785298,0.000671302,0.02069844,0.00005665939,0.00003008867,7.637378e-7,0.000004956575,0.00000138329,0.00000664272],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4880213,"threshold_uncertainty_score":0.9854397,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03372837026360625,"score_gpt":0.2990149488645205,"score_spread":0.2652865786009142,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}