{"id":"W2608515760","doi":"10.1093/nar/gkx295","title":"MicrobiomeAnalyst: a web-based tool for comprehensive statistical, visual and meta-analysis of microbiome data","year":2017,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1965,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"","keywords":"Profiling (computer programming); Visualization; Microbiome; Biology; Metagenomics; Data visualization; Shotgun sequencing; Data science; Computational biology; Human Microbiome Project; Computer science; Annotation; Data mining; Bioinformatics; Human microbiome; DNA sequencing","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.005201822,0.003785294,0.002597498,0.008516802,0.001422772,0.003281554,0.003017819,0.001556821,0.03448376],"category_scores_gemma":[0.009789342,0.002398025,0.002482021,0.004802252,0.0008008467,0.004102948,0.006635419,0.003567337,0.01830742],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000795452,"about_ca_system_score_gemma":0.003332785,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002109074,"about_ca_topic_score_gemma":0.003167823,"domain_scores_codex":[0.9978508,0.0004821603,0.0002442023,0.0003977694,0.0008311025,0.0001939734],"domain_scores_gemma":[0.9957361,0.002234219,0.0005511916,0.0004904415,0.0005266652,0.0004612204],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.002704628,0.0006434208,0.0131835,0.008133347,0.002280166,0.001992696,0.001784771,0.009256509,0.05893001,0.01242188,0.5519437,0.3367254],"study_design_scores_gemma":[0.001179443,0.0004282817,0.01814116,0.001661148,0.0005908887,0.002370528,0.0005009588,0.09597392,0.05658937,0.04584692,0.7758747,0.0008426461],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"software","genre_gemma":"software","genre_scores_codex":[0.005450669,0.001611481,0.3377204,0.0005015165,0.0003906226,0.0006544606,0.07714315,0.5726457,0.003882052],"genre_scores_gemma":[0.03636488,0.001966424,0.753684,0.001048631,0.0003125104,0.003092406,0.1296678,0.06713156,0.006731841],"genre_candidate":"software","genre_consensus":"software","teacher_disagreement_score":0.03448376,"threshold_uncertainty_score":0.1153597,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.2050305439053096,"score_gpt":0.4663702266663905,"score_spread":0.2613396827610809,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}